PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000296791

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

M-type_MADS

Protein Properties

Length: 256aa MW: 29027.7 Da PI: 7.1998

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000296791	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	29.7	8.1e-10	10	51	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 +en++ r+ f kR++ +l K E+ +LC++++ i++++++ MDP0000296791 10 VENDRARKECFRKRKANLLRKMDEITTLCQVNAFAIVYGQEN 51 69*************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.2E-8	1	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	12.348	1	51	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.19E-15	1	84	No hit	No description
SuperFamily	SSF55455	9.03E-17	3	91	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.0E-11	10	52	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MGKKVKLQWV ENDRARKECF RKRKANLLRK MDEITTLCQV NAFAIVYGQE NNDPTLWPSH 60 PEVEELIKGF FSIPNVERYK KSLNQETYLL EXAVRFRERI KKINKQIREM KVNKLVHQVH 120 EGKSLNEFER SDMTDLVSFC EEKMYGIKKL VAHLEKEDPN REQGTSNYEK GKEIENAAGN 180 IAANGIENSG DALGLGLMSH SGAGKEVGQP DVSHEMVKQS ENITGKKGKR IRLMGVAIEG 240 SVADDDDAED PPQHGN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008360624.2	0.0	agamous-like MADS-box protein AGL36
TrEMBL	A0A498I2E6	0.0	A0A498I2E6_MALDO; Uncharacterized protein
STRING	XP_008360624.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11014	19	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40210.1	4e-26	AGAMOUS-like 48

Link Out ? help Back to Top
Phytozome	MDP0000296791