PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000297791

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bZIP

Protein Properties

Length: 448aa MW: 47881.5 Da PI: 6.4107

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000297791	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.2	9.7e-10	248	296	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr++r NR +A rs +RK +++eLe+kv++L++e ++L +l + MDP0000297791 248 KRAKRILANRQSAARSKERKARYMQELERKVQTLQTEATTLSAQLTLFQ 296 9****************************************99887655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-15	244	308	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.841	246	309	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.0E-8	248	309	No hit	No description
SuperFamily	SSF57959	9.85E-11	248	299	No hit	No description
Pfam	PF00170	4.1E-8	248	296	IPR004827	Basic-leucine zipper domain
CDD	cd14703	4.49E-22	249	298	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MSTETTTPPM HQDQHLLQQP NPNSNFFTFN SNPNPNPNPK SNPIPPLPRS VGISGNANAS 60 GLAAAATSSS STSSTTSTSL SLATMLGNSA SPFIREDADG SHLHHDYGGS HRRAHSEVSF 120 RLSEDMVDMS AAAADPFNGG SSTASLEEMG SEEDLFSTYI DLDKLGGSNN SSDQNGGGND 180 GPNGGPNGGS NGNGGGGDGG GEKKLSRHRY SSSVDGSSTS TGVFGEVMDA KKAMPPDKLA 240 ELWNLDPKRA KRILANRQSA ARSKERKARY MQELERKVQT LQTEATTLSA QLTLFQRDTT 300 GLSTENTELK RRLQSMEQQA QLRDALNEAL KKEVERLKIA TGEMMSASDS FTLGMHQMPY 360 NHPSAYFPLQ QQPGPASHQT MHLPQFNHSQ SSMPTQHLHQ ANSRTHLSDM LQNGPVGQLQ 420 GLDIGSKGAP LVKSEDPSLS ASESSSTF

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MSTETTTPPM HQDQHLLQQP NPNSNFFTFN SNPNPNPNPK SNPIPPLPRS VGISGNANAS  60
GLAAAATSSS STSSTTSTSL SLATMLGNSA SPFIREDADG SHLHHDYGGS HRRAHSEVSF  120
RLSEDMVDMS AAAADPFNGG SSTASLEEMG SEEDLFSTYI DLDKLGGSNN SSDQNGGGND  180
GPNGGPNGGS NGNGGGGDGG GEKKLSRHRY SSSVDGSSTS TGVFGEVMDA KKAMPPDKLA  240
ELWNLDPKRA KRILANRQSA ARSKERKARY MQELERKVQT LQTEATTLSA QLTLFQRDTT  300
GLSTENTELK RRLQSMEQQA QLRDALNEAL KKEVERLKIA TGEMMSASDS FTLGMHQMPY  360
NHPSAYFPLQ QQPGPASHQT MHLPQFNHSQ SSMPTQHLHQ ANSRTHLSDM LQNGPVGQLQ  420
GLDIGSKGAP LVKSEDPSLS ASESSSTF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.16536	0.0	bud\| flower\| fruit\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed at high levels in roots, low level in leaf sheath, but not in leaf blade. Predominantly expressed in vascular tissues. {ECO:0000269\|PubMed:14704272}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008384666.1	0.0	transcription factor RF2b-like
Swissprot	Q6S4P4	2e-93	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A498IS60	0.0	A0A498IS60_MALDO; Uncharacterized protein
STRING	XP_008384666.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	4e-81	bZIP family protein

Link Out ? help Back to Top
Phytozome	MDP0000297791

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]