PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000298804
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family DBB
Protein Properties Length: 298aa    MW: 31653.3 Da    PI: 4.713
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000298804genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.11.4e-06447542
       zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                    C+ +e  e++  C  ++  lC  C ++ Hk       H++vpl
  MDP0000298804  4 QCNVCEAAEANVLCCADEAALCWACDEKVHKAnklaskHQRVPL 47
                   7******99*********************88999999999986 PP
2zf-B_box27.28e-095292337
       zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                   ++kC+ ++e    +fC +++ llC++C ++ H        H
  MDP0000298804 52 MPKCDICQEAVGYFFCLEDRALLCRKCDVAVHTAnsfvsaH 92
                   799*******9********************9554555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.708147IPR000315B-box-type zinc finger
CDDcd000211.98E-7347No hitNo description
SMARTSM003369.1E-11447IPR000315B-box-type zinc finger
PfamPF006433.6E-5447IPR000315B-box-type zinc finger
SMARTSM003362.1E-155097IPR000315B-box-type zinc finger
PROSITE profilePS501199.0445097IPR000315B-box-type zinc finger
PfamPF006439.1E-75284IPR000315B-box-type zinc finger
CDDcd000211.84E-85397No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MKIQCNVCEA AEANVLCCAD EAALCWACDE KVHKANKLAS KHQRVPLSSS HMPKCDICQE  60
AVGYFFCLED RALLCRKCDV AVHTANSFVS AHRRFLLTGI KVGPEPAQPD FGDGDGVGVG  120
VGVGADASSS TMKSRPGSGS GSVSRCETQD SLPVECKAAL PGVAGGMSFT GGSAAGTVPQ  180
CYIDEFLGLS DLDQSFGYID NGSSKADCGK LGEYGSPVLR SSEEELDDYE CIGEVPEASW  240
MVPQIPSPPT ASGLYWPKSL QNPSDSSTMF VPDICHSQME NPFCSQHNGT VSKHXRQF
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008348545.20.0B-box zinc finger protein 22-like
SwissprotQ9SYM22e-83BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A498K6E40.0A0A498K6E4_MALDO; Uncharacterized protein
STRINGXP_008348545.10.0(Malus domestica)
STRINGXP_008381093.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45663453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-85light-regulated zinc finger protein 1