PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000300311

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

GRAS

Protein Properties

Length: 244aa MW: 27161.3 Da PI: 8.6938

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000300311	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	69.5	6.3e-22	37	157	127	253
GRAS 127 aLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsle 221 L++ La+R+ l iT+vg + k+++ etg+rLa++A++l++pf+f+++++ ++ed++ + ++++ +Ea++V l ++ +++ +le MDP0000300311 37 VLMEVLAEREeCHIELLTITAVGV---TGKQKIXETGRRLASVAKALNLPFQFKAVIVADMEDVKGQLFDIEXDEAVVVYAPXILRTMISRPSCLE 129 69******4445699***...689*******************************************************8888888 PP GRAS 222 serdevLklvkslsPkvvvvveqeadhnsesF 253 + + +++++l P v+vv+ ea+hns+ + MDP0000300311 130 N----LXRVMRTLXPCVMVVIXVEANHNSPGL 157 8....999******************9876 PP
2	GRAS	46.8	5.1e-15	157	242	289	374
GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 l+ + i n+v +eg+er+ r + e Wr+ + ++ + +++ls+ a a+l+ +k++s + + + ++l+ gWk+ p+ s+SaW+ MDP0000300311 157 LFXEGIXNIVVAEGSERVXRSXKXEVWRAFFARFRMVEINLSNAALFXASLVSKKYGSPACTXDRNGNCLTVGWKGTPIHSLSAWK 242 68899****************************************************9***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	12.794	1	244	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.2E-19	37	157	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MVRCGLQHYK VDRFAPRKHL NGHKTALGSD QGCPDSVLME VLAEREECHI ELLTITAVGV 60 TGKQKIXETG RRLASVAKAL NLPFQFKAVI VADMEDVKGQ LFDIEXDEAV VVYAPXILRT 120 MISRPSCLEN LXRVMRTLXP CVMVVIXVEA NHNSPGLFXE GIXNIVVAEG SERVXRSXKX 180 EVWRAFFARF RMVEINLSNA ALFXASLVSK KYGSPACTXD RNGNCLTVGW KGTPIHSLSA 240 WKFS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009378753.1	1e-113	PREDICTED: DELLA protein RGL1-like
TrEMBL	A0A314ZT21	1e-105	A0A314ZT21_PRUYE; DELLA protein RGL1-like
STRING	XP_009378753.1	1e-113	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	3e-20	RGA-like 2

Link Out ? help Back to Top
Phytozome	MDP0000300311