PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000300393
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 168aa    MW: 19207.1 Da    PI: 6.9208
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000300393genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.85e-1127556128
            NAM  56 kewyfFskrdkkyatgkrknra..tksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    k++y F++ ++k+++g+r  r+  t+ g+Wk     ke++++  ++++g +k +++ ++ +  +++ +W+m e++l
  MDP0000300393   2 KDIYVFTTLNSKAPNGSRVCRTvgTTGGTWKGEDAGKEIYASgIKHAIGFRKRFTYRNKGS--PQNDHWIMLEFHL 75 
                    678******************645779**************855677*********95444..459********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-12180IPR003441NAC domain
PROSITE profilePS5100516.5721104IPR003441NAC domain
PfamPF023656.8E-6475IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
DKDIYVFTTL NSKAPNGSRV CRTVGTTGGT WKGEDAGKEI YASGIKHAIG FRKRFTYRNK  60
GSPQNDHWIM LEFHLDPSLL RNKHHQAITA TTTGDYIYDP RYKEENAANH FQPQEHYSAT  120
TGDYGNAHWY TKQNAADHFE PHDETHNATN EDLTTALRRM EEILMSGF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008337178.21e-101NAC transcription factor 32-like
RefseqXP_008368781.21e-101NAC domain-containing protein 41-like
TrEMBLA0A498KBK18e-91A0A498KBK1_MALDO; Uncharacterized protein
STRINGXP_008368783.11e-100(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133