PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000300752
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 211aa    MW: 24217.6 Da    PI: 10.3936
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000300752genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.23.8e-27959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   kri n + rqvtfskRrng+lKKA+ELS+LCdaeva+iifs++gk y ++s
  MDP0000300752  9 KRIXNPTSRQVTFSKRRNGLLKKAFELSILCDAEVALIIFSPSGKAYQFAS 59
                   79**********************************************986 PP
2K-box49.42e-1781143768
          K-box   7 ks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRsk 68 
                    +s l ++++e++++e + L++ i nL+  + +l Ge+L++L ++eL+qLe+qL++++++iRsk
  MDP0000300752  81 SSfLRARTMEYWRNENEELRRSIGNLEMRLMNLAGEELSTLGVQELKQLERQLKTGVERIRSK 143
                    33688899*****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.9E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.637161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-31278IPR002100Transcription factor, MADS-box
CDDcd002651.84E-38270No hitNo description
PRINTSPR004041.7E-29323IPR002100Transcription factor, MADS-box
PfamPF003194.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.4E-1288144IPR002487Transcription factor, K-box
PROSITE profilePS512977.90289192IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGRGKVELKR IXNPTSRQVT FSKRRNGLLK KAFELSILCD AEVALIIFSP SGKAYQFASH  60
DITRTISMYR REVGLPESNN SSFLRARTME YWRNENEELR RSIGNLEMRL MNLAGEELST  120
LGVQELKQLE RQLKTGVERI RSKMPTPKMQ TRIKKPDLPQ AFVRTTTYAA VSPEKMTEFL  180
DLDESLAHAQ ADPPPKKFHC ATEDQRNRVA V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-21169169MEF2 CHIMERA
6byy_B2e-21169169MEF2 CHIMERA
6byy_C2e-21169169MEF2 CHIMERA
6byy_D2e-21169169MEF2 CHIMERA
6bz1_A2e-21169169MEF2 CHIMERA
6bz1_B2e-21169169MEF2 CHIMERA
6bz1_C2e-21169169MEF2 CHIMERA
6bz1_D2e-21169169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (Probable). Is required, together with TT16/AGL32 for the maternal control of endothelium formation, which is essential for female gametophyte development and fertilization, and seed formation (PubMed:22176531). {ECO:0000269|PubMed:22176531, ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1640250.0KP164025.1 Pyrus pyrifolia clone PpTM8-2 TM8-like MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008392793.21e-100MADS-box transcription factor 23-like isoform X1
SwissprotQ388362e-44AGL11_ARATH; Agamous-like MADS-box protein AGL11
TrEMBLA0A498I4L63e-99A0A498I4L6_MALDO; Uncharacterized protein
STRINGXP_008392793.11e-99(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.25e-47MIKC_MADS family protein
Publications ? help Back to Top
  1. Ezquer I, et al.
    The Developmental Regulator SEEDSTICK Controls Structural and Mechanical Properties of the Arabidopsis Seed Coat.
    Plant Cell, 2016. 28(10): p. 2478-2492
    [PMID:27624758]