PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000301561
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 446aa    MW: 50081 Da    PI: 9.5114
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000301561genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.76.1e-122884094110
            NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                    G  F+P+ e ++ +yL +k++g+ +++e+vi+++d+ k  P d ++      ++  e+++ yf+++++     + +++r t++gyWk   +++  +
  MDP0000301561 288 GESFNPNPETILIKYLFNKLAGRATPVEDVIRHIDLQKGMPPDANQvppslfCHGDENRSAYFYICAEAVL-GDVKTTRPTSNGYWKLLSNEQVHI 382
                    789***********************************999998645677755555666889999998876.57899999*******877654333 PP

            NAM  94 sk...kgel.....vglkktLvfy....k 110
                    +    +  +     vg  +t  +y    k
  MDP0000301561 383 QMsgdG--VatvchVGNARTWRYYgrdlK 409
                    323431..245666999999999944332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF148171.2E-10147217IPR029131HAUS augmin-like complex subunit 5
PROSITE profilePS5100513.133285446IPR003441NAC domain
SuperFamilySSF1019414.71E-9287431IPR003441NAC domain
PfamPF023656.7E-6288425IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0051225Biological Processspindle assembly
GO:0070652Cellular ComponentHAUS complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MVGAKPCNTP LSTSKIDHAS PLLDNAFEYR SLVGALQYLT WTRPDLSFAV NLVCQFMHTP  60
KVSHFQAVKR ILRYLKGTID HGLWFSKCSS VPSLKAFSDA DWAGYPNSHK PSQRPPLPSI  120
RSASHSPDAD SGVSVSSQSS AAQPEAILQW LQKEKLREAA SVAETREVAL QERDLAVKEM  180
EKLRNIVKRQ RKDLKARMLK VSRAEAERKR MLDELSKKSV YAADXIMVFS MPSRKYEKWE  240
QTERLGGLTL LALNAIGDGS GVYLSRRQSI YIKAITESCT EADLDERGES FNPNPETILI  300
KYLFNKLAGR ATPVEDVIRH IDLQKGMPPD ANQVPPSLFC HGDENRSAYF YICAEAVLGD  360
VKTTRPTSNG YWKLLSNEQV HIQMSGDGVA TVCHVGNART WRYYGRDLKR PMRAASETCF  420
KIREYWYAQS VPTAKIEINS AGIIKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF433