PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000301999

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 480aa MW: 51949.7 Da PI: 5.0852

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000301999	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.7	1.3e-05	371	408	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L MDP0000301999 371 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 408 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.973	359	408	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-11	369	427	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.34E-6	369	413	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.2E-8	373	416	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MAEEFQARIC GGNPWWSSSR HVLAASPCSV GFNDHMGGFG YPNDMVDIKA TRSSCGEINN 60 SVSDDHDGGD HSNSIANFDQ YQDVQKPDHD STLQMIGFGL SSSLSSTPSD FNQALLLRSS 120 SGRGESNFHN SMLQEDMGMN TKLNTGALGD EESSSIINVF KPMNQDLSLD QLGSXSSSGF 180 PISSSSSAAI SYGFSSALML QTLFDSEPVP QTQPQQSVFN NNQFSNGPLL SPSPTSNCWP 240 PRYSPNSCLR PSSLPKQLQP GVXGGSLHFS NNISTPFWNA PTPAALNQDN TIRSSNDLFS 300 SSQAQYTTPS LSPFHEKKPN SNNFTTKANT NGDVQDSSSS VVKKSSSSAC EPVFKRARIE 360 TPSPLPTFKV RKEKLGDRIT ALQQLVSPFG KTDTASVLHE AIEYIKFLHD QVSVLSTPYM 420 KNGAPMQQQQ GTDKMEEASE GAQQDLQSRG LCLVPISSTF PVANETTADF WTPSFGATFR

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MAEEFQARIC GGNPWWSSSR HVLAASPCSV GFNDHMGGFG YPNDMVDIKA TRSSCGEINN  60
SVSDDHDGGD HSNSIANFDQ YQDVQKPDHD STLQMIGFGL SSSLSSTPSD FNQALLLRSS  120
SGRGESNFHN SMLQEDMGMN TKLNTGALGD EESSSIINVF KPMNQDLSLD QLGSXSSSGF  180
PISSSSSAAI SYGFSSALML QTLFDSEPVP QTQPQQSVFN NNQFSNGPLL SPSPTSNCWP  240
PRYSPNSCLR PSSLPKQLQP GVXGGSLHFS NNISTPFWNA PTPAALNQDN TIRSSNDLFS  300
SSQAQYTTPS LSPFHEKKPN SNNFTTKANT NGDVQDSSSS VVKKSSSSAC EPVFKRARIE  360
TPSPLPTFKV RKEKLGDRIT ALQQLVSPFG KTDTASVLHE AIEYIKFLHD QVSVLSTPYM  420
KNGAPMQQQQ GTDKMEEASE GAQQDLQSRG LCLVPISSTF PVANETTADF WTPSFGATFR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.2412	0.0	leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018505604.1	0.0	PREDICTED: transcription factor bHLH112 isoform X1
TrEMBL	A0A498JZ72	0.0	A0A498JZ72_MALDO; Uncharacterized protein
STRING	XP_009369342.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1118	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	3e-53	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000301999