PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000302532
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 294aa    MW: 33331.3 Da    PI: 10.3895
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000302532genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.73.7e-1727113899
                    -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
             B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                      +l+ grl +p  f+ +++        + l+d++gr+W+++l  +++ g+++l+kGW+eF+k   L+ g  +vF+++g  s f  +v++f++
  MDP0000302532  27 DKALRDGRLEIPPAFVMKNEDC--LADSVFLKDPTGRVWRIEL--TRRCGKVWLQKGWSEFAKFYSLNHGYLLVFSHEGGfSHF--LVRIFQR 113
                    5678889*********999755..4446***************..*********************************998999..****987 PP
2B350.44.1e-16193291196
                    EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.S CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld..gr.s 88 
                    f+ v +++++ +s+ l+l+ +f+++h    g+  +  ++ le +s rsW vk+++   ++++     +GWk F+++n++k+gD +vF+l+  g  +
  MDP0000302532 193 FLVVKMQPSYIASQ-LRLSGSFVRRHicaRGV--C--DMNLEISSRRSWPVKCRVgvYRRKQYARVYDGWKAFARENRVKVGDACVFELInkGGtR 283
                    56677788888886.***********876555..5..7***************996655555577789********************98433335 PP

                    EE..EEEE CS
             B3  89 efelvvkv 96 
                    +++++v+v
  MDP0000302532 284 SATFKVGV 291
                    55555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-2115114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-1916114IPR015300DNA-binding pseudobarrel domain
CDDcd100172.51E-2019111No hitNo description
PROSITE profilePS5086313.16920114IPR003340B3 DNA binding domain
SMARTSM010191.8E-1021114IPR003340B3 DNA binding domain
PfamPF023625.0E-1427113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-19186293IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-18187293IPR015300DNA-binding pseudobarrel domain
CDDcd100173.48E-18192293No hitNo description
PfamPF023623.4E-14193290IPR003340B3 DNA binding domain
SMARTSM010193.4E-6193290IPR003340B3 DNA binding domain
PROSITE profilePS5086310.941234294IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MASLSRRDDG DSPLPAKAPT FFKIVLDKAL RDGRLEIPPA FVMKNEDCLA DSVFLKDPTG  60
RVWRIELTRR CGKVWLQKGW SEFAKFYSLN HGYLLVFSHE GGFSHFLVRI FQRNTLEIDY  120
PISSSHDGVP MLCGGIQLPK NEEHGDNVSV KILDSPRPKT RSGGGMHTDE EKTTRLSDRA  180
FSRAVSFKSS NPFLVVKMQP SYIASQLRLS GSFVRRHICA RGVCDMNLEI SSRRSWPVKC  240
RVGVYRRKQY ARVYDGWKAF ARENRVKVGD ACVFELINKG GTRSATFKVG VYRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008381043.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A498JYE30.0A0A498JYE3_MALDO; Uncharacterized protein
STRINGXP_008381043.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-30B3 family protein