PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000303041
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 715aa    MW: 79703.1 Da    PI: 5.7594
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000303041genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM84.71.8e-26321623127
            NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                    + +rFhPt++e+  ++L kk++++k ++ ++++ +d+yk+eP++Lp+       +  + k w+ Fs  d ky+++ r+nr+t++g+Wk tgk +++
  MDP0000303041  32 AAIRFHPTEKEMA-DFLGKKMRSHKSQACHFLPVIDVYKSEPRELPElmfsD--SpfQAKAWFSFSLCDYKYTNSLRRNRVTEHGFWKITGKPRDI 124
                    678********99.9**********999999***************533332..155788************************************ PP

            NAM  93 lskkgelvglkktLvfy.....kgrapkgektdWvmheyr 127
                     s  +  +  +++L+f      +g a+k+++t W++hey 
  MDP0000303041 125 SS--KYFTCKRRILTFQsktfeEGGASKSVRTGWIIHEYY 162
                    99..44566677788876666689999************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-3022190IPR003441NAC domain
PROSITE profilePS5100530.27330190IPR003441NAC domain
PfamPF023651.8E-1033161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MYKTFEGEGG GMGNSTTTTK TTTAQSVPDM MAAIRFHPTE KEMADFLGKK MRSHKSQACH  60
FLPVIDVYKS EPRELPELMF SDSPFQAKAW FSFSLCDYKY TNSLRRNRVT EHGFWKITGK  120
PRDISSKYFT CKRRILTFQS KTFEEGGASK SVRTGWIIHE YYCSKPKQGS SPCQERDVKR  180
DYVLCLLKYK PVDSKSDKKK PEGTSVCDDL ADPGNCGYIA SSPGDDHTTS AAAMIHMTPD  240
SEEGLAYKEL EDDLLGNGNH DHGEPLGSVS SDLIDQALSA MIHEVWFYVP WQSYALLGRY  300
LDSPFPPPEA PQLHQPSHLG NAPGIYSHEL LDPGTGGCIT YNTNNQAAAM NHMIPVTEEI  360
LAHKQPDSSV LGSGDDDGGE LGSGISSDFN DPAVDDMILY CCSQLGKELD SPLSSPEPPQ  420
PPQPHQPHQL GNVLDIHSSK FSHWASPIGD NDSYVANTNN IATNYDNEPV MNIAYNSKNH  480
ATNEWISEVY SQAEENWGST FQPFDQLQKY ALQSPILFSK XGELLHANNY IGCNELQSLA  540
MEIATPSPQX EYLEGLVRMC LQLTLLHGDI LLQNPQVLYT STLLGELLLV QRHTRKCKQL  600
KCYXELYPSQ NAMSPDKTSS SLSYKSNNTQ PQYPPTSFPV YPHGDAHNRN IHQHLSLSTH  660
MEMLQEESEC RAVSRNKVSE AAAGALYCFL LIPFEAGMXC ATNXRVLSIS WKHLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-153318720162NO APICAL MERISTEM PROTEIN
1ut4_B2e-153318720162NO APICAL MERISTEM PROTEIN
1ut7_A2e-153318720162NO APICAL MERISTEM PROTEIN
1ut7_B2e-153318720162NO APICAL MERISTEM PROTEIN
4dul_A2e-153318720162NAC domain-containing protein 19
4dul_B2e-153318720162NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017188682.20.0protein CUP-SHAPED COTYLEDON 1-like isoform X2
TrEMBLA0A498JF660.0A0A498JF66_MALDO; Uncharacterized protein
STRINGXP_008376271.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1887626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.18e-22NAC domain containing protein 94