PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000303501
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 308aa    MW: 35277.1 Da    PI: 10.1461
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000303501genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.12.7e-14151191343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
         SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 
                    i n+s r+  f kR++ + KKA ELS LCd++va+i++  +
  MDP0000303501 151 IPNESARKMAFRKRKKNVYKKADELSKLCDIDVALIVYEAD 191
                    889**********************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.451141188IPR002100Transcription factor, MADS-box
CDDcd001206.27E-13142188No hitNo description
SMARTSM004322.2E-4143201IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-5143163IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-15146224IPR002100Transcription factor, MADS-box
PfamPF003193.4E-14151190IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-5163178IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-5178199IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MXFKEYSGFR XYFQMHLVSD QTRMLKTLTF LGCYEADQKK GIRPIQLETR PQDPAEFNXI  60
LXRYKASKDX ATPVSKREAS VCPIFMRPRR RKMMALMIVM VIMIEDGDDD DDADPKLQKQ  120
GKKQISEDKE IAEKIEQKKM VAPTRRSLEL IPNESARKMA FRKRKKNVYK KADELSKLCD  180
IDVALIVYEA DQXKGIRPIQ PETWPQDPVE FNRILDRYKL YAEKQNRNLS RPESSSGKTL  240
QHLKPANFDV QKPPSQNPMN TTTTASTTST SATQSKPPTS VKCPMLPSAW ISFSESQKTS  300
LRTSSSGG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18791PRRRK
2161165RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009345855.11e-68PREDICTED: agamous-like MADS-box protein AGL82
RefseqXP_018500589.11e-68PREDICTED: agamous-like MADS-box protein AGL82
TrEMBLA0A498HTF19e-64A0A498HTF1_MALDO; Uncharacterized protein
STRINGXP_009345855.16e-68(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-12M-type_MADS family protein