PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000304769
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 583aa    MW: 65046.3 Da    PI: 6.5679
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000304769genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.21.1e-16295392196
                    EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f k+l++sdv+ +gr+++pkk ae++    +   +e+++lt++d  s + We+k++y  +++s++yv++  +  Fv++++L++gD + ++  ++++
  MDP0000304769 295 FNKELKNSDVGPLGRIIVPKKEAENNlpmlS--GKEGIQLTVRDvHSDQHWEFKYKYwsNNRSRMYVFE-YTGAFVRQKRLEAGDCIYLY--EDEC 385
                    889********************999**654..447889*****5556*******99877777778888.99****************99..5688 PP

                    E..EEEE CS
             B3  90 felvvkv 96 
                    ++ +v v
  MDP0000304769 386 KNIYVYV 392
                    8777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-25288399IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-20293392IPR015300DNA-binding pseudobarrel domain
CDDcd100176.95E-19293384No hitNo description
PROSITE profilePS508638.642295396IPR003340B3 DNA binding domain
SMARTSM010191.2E-11295396IPR003340B3 DNA binding domain
PfamPF023621.7E-12295392IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0010344Biological Processseed oilbody biogenesis
GO:0010431Biological Processseed maturation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MEFPSQCDYH SYSVANSDGL KSSFDSRLVI EEMTSKQDME SNREVEVVQW TTKMKTQVPL  60
SSSGEALICN VGLQSVSYGV CGTCRTTRCG VRLQREEIIP GDSSPFTSSF YNVHKLTLTG  120
QSTSTSCSWD AGFRERQGVS LESKRGKRAR KCGLAEGNDC MCPSATQYRY YPYHQAGLPM  180
YPFLGGAQPN MVLSREQASL DRSGWILNAL MSKSARNERK MARQRSLNLS RNAANTAVSC  240
SPPVSRHPPF HGNHDDDTCG IISTSSSGNG ADLQNTKEQL YPFCTPDNKK LRPLFNKELK  300
NSDVGPLGRI IVPKKEAENN LPMLSGKEGI QLTVRDVHSD QHWEFKYKYW SNNRSRMYVF  360
EYTGAFVRQK RLEAGDCIYL YEDECKNIYV YVEKVPRPAR VAEPSSSSQQ RNTTTNHTDQ  420
TANMNTSLEA NNTDNKTPNT DAKTHRSNPY VASNLSSPSP SPSPFTYVAG YEEDELSLEL  480
LMEQLKQEQE ANVFADAVSM TSASSSAYME HEEATTLSNN IANRHIEIST KPPSTLSAGI  540
DPSSSSSSQS RAMVRMVNDD QPEFDDCYKG LGTLPEVDHY KYV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A3e-392853893107B3 domain-containing transcription factor LEC2
6j9c_D3e-392853893107B3 domain-containing transcription factor LEC2
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00032PBMTransfer from AT1G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008383722.10.0B3 domain-containing transcription factor LEC2
RefseqXP_017190268.10.0B3 domain-containing transcription factor LEC2
RefseqXP_017190271.10.0B3 domain-containing transcription factor LEC2
RefseqXP_028966196.10.0B3 domain-containing transcription factor LEC2
RefseqXP_028966197.10.0B3 domain-containing transcription factor LEC2
RefseqXP_028966198.10.0B3 domain-containing transcription factor LEC2
RefseqXP_028966199.10.0B3 domain-containing transcription factor LEC2
RefseqXP_028966200.10.0B3 domain-containing transcription factor LEC2
RefseqXP_028966201.10.0B3 domain-containing transcription factor LEC2
RefseqXP_028966202.10.0B3 domain-containing transcription factor LEC2
RefseqXP_028966203.10.0B3 domain-containing transcription factor LEC2
RefseqXP_028966204.10.0B3 domain-containing transcription factor LEC2
RefseqXP_028966205.10.0B3 domain-containing transcription factor LEC2
RefseqXP_028966206.10.0B3 domain-containing transcription factor LEC2
TrEMBLA0A498IWP00.0A0A498IWP0_MALDO; Uncharacterized protein
STRINGXP_008383719.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123482127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.16e-40B3 family protein