PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000305976
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 511aa    MW: 56767.1 Da    PI: 5.3814
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000305976genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.85.9e-16302350154
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    +r++h + Er+RR+++N +f+ L++l+P++     +K++ a+i+  A+eYI++L
  MDP0000305976 302 KRTKHFATERQRRQQLNGKFDILKDLVPNP-----TKNDRASIVGDAIEYINEL 350
                    79****************************.....9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.9E-14300359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.298301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-13302350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-17302369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.97E-15302355No hitNo description
SMARTSM003533.4E-12307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MYQDTVACNF DPNSIPESAA ESVLDLNPLP PQPLPQQPPQ VLMPSSDTTH HHNTTTTGFG  60
VEANTRLSME ELSYHPHHHQ YHHSSMEIDL QNELGFNVDD SYTTNTDHNN NINNSHLVSF  120
EHPTNWDTTN IHGVHDQMQQ QFPDGTTSAT CTLYPQPPDL LNLFSLPRCS PSSLLQSSSI  180
TFTNPLPKTS NFPSSFGLLG DLPTAVDTPQ GTASSVLYDP LLHLNLPPQP PLFRELLQSL  240
PHGYTLPGSG NGSLFSSGGD DREGSGGGVL YDPDRSLGRQ FDSGVLEFSR DMASNGIGRD  300
LKRTKHFATE RQRRQQLNGK FDILKDLVPN PTKNDRASIV GDAIEYINEL LRTVEELKLL  360
VEKNRCGRER IKRYKTEHDG AAAAGDDESC NIQPLGEPHD QSYNNGSLRS SWLQRKSKDT  420
EVDIRIIDDE VTIKLVQRKK INLLLFVSRL LDELQLDLHH VAGGQIGNSY SFFFNTKMYE  480
GSCLYASAIA GKLIEVLDRQ YAAAVLPPTN S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301313KRTKHFATERQRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.302990.0bud| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028955043.10.0transcription factor bHLH91-like
TrEMBLA0A498KEK30.0A0A498KEK3_MALDO; Uncharacterized protein
STRINGXP_008347044.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.16e-78bHLH family protein