PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000307383
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ARR-B
Protein Properties Length: 218aa    MW: 25227.6 Da    PI: 6.2374
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000307383genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like64.32.2e-20170218251
        G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                    +r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQ
  MDP0000307383 170 ARVVWSVDLHQKFVKAVHQI-GFDKVGPKKILDLMNVPWLTRENVASHLQ 218
                    69******************.9***************************9 PP
2Response_reg59.32.1e-20169729109
                    ESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
   Response_reg  29 addgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                    +  +++al+ll++k+  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga d+l Kp+ ++el++
  MDP0000307383  16 CGLARDALHLLRQKKdgYDIVISDVNMPDMDGFRLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 97 
                    55578999999888889**********************6644.8***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011031.5411103IPR001789Signal transduction response regulator, receiver domain
SMARTSM004481.3E-10299IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.5E-3013111No hitNo description
CDDcd001561.18E-1814103No hitNo description
SuperFamilySSF521721.41E-2316109IPR011006CheY-like superfamily
PfamPF000725.3E-171998IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:1.10.10.606.4E-22167218IPR009057Homeodomain-like
SuperFamilySSF466891.65E-12168218IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-18170218IPR006447Myb domain, plants
PfamPF002498.9E-7171218IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MQEDNDNVFP LIMTTCGLAR DALHLLRQKK DGYDIVISDV NMPDMDGFRL LEHVGLEMDL  60
PVIMMSVDGE TSRVMKGVQH GACDYLLKPI RMKELRNIWQ HVFRKKIHEI RDIESHESFE  120
GIQFIRSGSD QYDEGYFLSA DDLTSSRKRK DVDNKYDDKD FADLSSTKXA RVVWSVDLHQ  180
KFVKAVHQIG FDKVGPKKIL DLMNVPWLTR ENVASHLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-14165218154ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.161690.0bud| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028947593.11e-144LOW QUALITY PROTEIN: two-component response regulator ARR11
SwissprotQ5N6V81e-102ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A498ICU71e-145A0A498ICU7_MALDO; Two-component response regulator
STRINGXP_008390110.11e-149(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-94response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]