PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000309179
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 740aa    MW: 83428.7 Da    PI: 5.9713
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000309179genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.12.1e-055105431755
                    HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    N+++  Lr+++P+      + ++Ka+iL  +++Y+k+L+
  MDP0000309179 510 NEKLLVLRSMVPSI-----TEVDKASILDDTIKYLKELE 543
                    99999********7.....69***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.1E-4912238IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.813493542IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-4502548IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.67E-6508547No hitNo description
Gene3DG3DSA:4.10.280.105.7E-8510556IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-8510555IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MAQNHERVPG NLRKQFAVAV RSIKWSYAIF WSLSTTQQGV LEWGEGYYNG DIKTRKKVEG  60
VELKTDKMGL QRNVQLRELY KSLLEGETET EQQAKAPSAV LSPEDLTDAE WYYLLCMSFI  120
FNPGEGLPGR ALATGQTIWL CNAQHXDSKV FSRSLLAKMQ IGLTAFVFSV NLFFYGWIST  180
VAHRVHLFSL LHNAINVIFF NXFAFQTVVC FPYLGGVVEL GVTELVSEDL NLIQHIKASL  240
LDFSKPDCCE KSSSAPHKPD DDSEQIVAKV DHDVVDTLPL ENLYSPSEEI KFDQRGINGL  300
LGNHEEVNMD SSDECSNGCD HNHPTEDSMM LEGTNAVASQ VQSWHFMDED FSSGVQDSMN  360
SSDSISEAFV NQGKAHSFAK HENANHIHLK ELQNFNDTKL SSLYLGSVDE HVHYKRTLST  420
LLGSSMKLIE NPCFCXGESK SSFVKWKKEV VGSCRPTVHQ KTLKKILFTV PLMYGXHSPM  480
ATGKENTGKD LLPNLQGDDI NREHDKMREN EKLLVLRSMV PSITEVDKAS ILDDTIKYLK  540
ELEARAEEME SCMDXVEAIS RGKFLNRVEK TSDNYDKTKK NNVKKSLVKK RKACDIDETD  600
PYPNMLVSGE SLPLDVKVCV KEQEVLIEMR CPYREYILLD IMDAINNLYL DAHSVQSSIL  660
DGVLTLSLKS KFRGAAISPV GMIKQVLWKI ADIEFKIKCS PINSSCIIQY CKLXLDYFIW  720
NALAKQCQVA NCPPSSRVQN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.162410.0bud| cell culture| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2664510.0DQ266451.1 Malus x domestica bHLH33 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028961533.10.0transcription factor MYC1
TrEMBLQ0QN710.0Q0QN71_MALDO; BHLH33
STRINGXP_009340108.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-132bHLH family protein