PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000309445

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NAC

Protein Properties

Length: 250aa MW: 28886.3 Da PI: 4.9909

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000309445	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	75	1.8e-23	3	74	58	128
NAM 58 wyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 wyfFs++d ky +++r+nr+t g Wk tgk+++++++ +++++g k+tL+fy+ +pk+ ktdWvmhe+ l MDP0000309445 3 WYFFSPKDYKYINSTRSNRTTPGGHWKITGKERAIKDRhSKAVIGKKRTLTFYRRCQPKPIKTDWVMHEFYL 74 9**********************************9566679***********************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	29.805	1	91	IPR003441	NAC domain
SuperFamily	SSF101941	1.16E-26	2	80	IPR003441	NAC domain
Pfam	PF02365	1.7E-11	3	73	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MVWYFFSPKD YKYINSTRSN RTTPGGHWKI TGKERAIKDR HSKAVIGKKR TLTFYRRCQP 60 KPIKTDWVMH EFYLIDSEAI SNPKLHQVRM RTVSSLKFFV MDVDSLKLNA SLVHALQSQD 120 YSSSTYLSSG YIELGDIPQG NANIDDCNAM QSPFGYNNYS YPDKNDISTC DEGEPPSFTM 180 FDFENEVPDH MSQEVCPPRE ENLELFFYPP QPEDYTLEPL MNMTVGDVLH DNNYIAYNEF 240 GPQFEATPSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-15	3	76	73	144	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-15	3	76	73	144	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-15	3	76	73	144	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-15	3	76	73	144	NO APICAL MERISTEM PROTEIN
3swm_A	2e-15	3	76	76	147	NAC domain-containing protein 19
3swm_B	2e-15	3	76	76	147	NAC domain-containing protein 19
3swm_C	2e-15	3	76	76	147	NAC domain-containing protein 19
3swm_D	2e-15	3	76	76	147	NAC domain-containing protein 19
3swp_A	2e-15	3	76	76	147	NAC domain-containing protein 19
3swp_B	2e-15	3	76	76	147	NAC domain-containing protein 19
3swp_C	2e-15	3	76	76	147	NAC domain-containing protein 19
3swp_D	2e-15	3	76	76	147	NAC domain-containing protein 19
4dul_A	2e-15	3	76	73	144	NAC domain-containing protein 19
4dul_B	2e-15	3	76	73	144	NAC domain-containing protein 19

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028955814.1	1e-156	NAC domain-containing protein 71-like
TrEMBL	A0A498KJD1	1e-171	A0A498KJD1_MALDO; Uncharacterized protein
STRING	XP_009376044.1	6e-84	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14450	5	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03200.1	1e-21	NAC domain containing protein 45

Link Out ? help Back to Top
Phytozome	MDP0000309445