PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000309784
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 619aa    MW: 69881.8 Da    PI: 9.7636
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000309784genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.21.7e-198831494
                   T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
             B3 14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                   ++l+lp +fa+++  + +++   ++l+ ++gr+W+vk++y++k+ r++l   W  Fv++n+Lk gD++vF+l++   f+ ++
  MDP0000309784  8 NQLILPSEFAKRYlTQHPTG--SVILRVPDGRTWNVKFKYENKRARFLLD--WLAFVEDNNLKIGDVCVFMLIKG--FKITF 83
                   469**********7434444..6***************************..*******************9974..44433 PP
2B351.32.1e-16390479496
                    E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    v+ ps+v++s  l+l  +f+++h  +k+  +   +l+ ++  +W+vkl+ ++++ r +l+ GW+ Fv +n+L++ D++vF+l+++ + ++ v v
  MDP0000309784 390 VMQPSYVTQSY-LYLRSEFTQRHlXMKS-AGGNAILKGPNXGTWSVKLKCENSKAR-FLQ-GWQAFVXDNNLEVDDVCVFTLMKDVKLSFEVFV 479
                    66677777776.***********74444.44589**************87777766.466.*********************987666555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-19189IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.1E-12191IPR003340B3 DNA binding domain
PROSITE profilePS5086313.972191IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-20190IPR015300DNA-binding pseudobarrel domain
CDDcd100172.28E-21189No hitNo description
PfamPF023624.2E-17885IPR003340B3 DNA binding domain
SuperFamilySSF498991.28E-6207277IPR013320Concanavalin A-like lectin/glucanase domain
Gene3DG3DSA:2.60.120.2005.6E-9208277IPR013320Concanavalin A-like lectin/glucanase domain
PfamPF002625.1E-5211277IPR001580Calreticulin/calnexin
Gene3DG3DSA:2.40.330.105.9E-21381481IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-20382481IPR015300DNA-binding pseudobarrel domain
CDDcd100177.69E-17385480No hitNo description
PROSITE profilePS5086312.055386483IPR003340B3 DNA binding domain
SMARTSM010194.2E-9387483IPR003340B3 DNA binding domain
PfamPF023621.4E-13389476IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006457Biological Processprotein folding
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003677Molecular FunctionDNA binding
GO:0005509Molecular Functioncalcium ion binding
GO:0051082Molecular Functionunfolded protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MQPSYIFNQL ILPSEFAKRY LTQHPTGSVI LRVPDGRTWN VKFKYENKRA RFLLDWLAFV  60
EDNNLKIGDV CVFMLIKGFK ITFEVAFYRS KEAAICSISS AAKECSGGLX TAQRGQEPFT  120
ISERSRAYKS STSLDEPDYE DENEDSVEIS DDFQRCTRKT REKSPLPSPQ PLKKIRTSNK  180
AAKKCNINFR PTKIEPRSKF AVKKYEVDSI FYEPFSESFE GRWIVSSKDK YQGVWKLSKS  240
EGHDDYGLLV SEKARKYAVV KEMDKAVSLA DGTVVLQSGS GYLKNNVPVK WVLLLVLRTH  300
LLLLRRYGQH APPDELIRFS LSILGSRLKF LSGGDESDDD SVVFLDKFAS CPKNFXKSLL  360
ASSTTSGKAI ALERAIAFCS KSVNPSFWIV MQPSYVTQSY LYLRSEFTQR HLXMKSAGGN  420
AILKGPNXGT WSVKLKCENS KARFLQGWQA FVXDNNLEVD DVCVFTLMKD VKLSFEVFVF  480
GTTEAANCSM SPTGPSDTSF SAIXAAKKFV SSNPLLQSHP WSGVIPVFQL VFSKHFIEKK  540
KQIVTLRVDD RMWHCWKLAR LVGGHEGVAP GQLCTRKSRE KSLLTCLQPF KNIRTSSTGQ  600
EEKPNTAITI SLLQNGERL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018505420.11e-122PREDICTED: B3 domain-containing protein LOC_Os12g40080-like
TrEMBLA0A498KNH54e-72A0A498KNH5_MALDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1657124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-11related to vernalization1 1