PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000309944
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Dof
Protein Properties Length: 305aa    MW: 33167.5 Da    PI: 7.6199
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000309944genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.12.3e-3954114262
         zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                    ++++l+cprC stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknkks+
  MDP0000309944  54 PQEQLNCPRCSSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNKKST 114
                    6899******************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2450106IPR003851Zinc finger, Dof-type
PfamPF027011.6E-3356112IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.92958112IPR003851Zinc finger, Dof-type
PROSITE patternPS0136106096IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDSTAPSEVG SNKAMIPPSL CSGAGSGELE KPMEDHEMGS NGCTRSVLEK RARPQEQLNC  60
PRCSSTNTKF CYYNNYSLTQ PRYFCKTCRR YWTEGGTLRN VPVGGGSRKN KKSTSSSASV  120
SSKITIPDLN PPTTLSHFSS SHQNPRVTHE GQDLNLTFDS IDAHYHGTTM ENNNSTNSSS  180
APNLSAMELL RTGIASRGVN SFMPTQNMPD HHSNTVLYPP SSVGFSLQEF KPTSLGFCVD  240
GLGNRYGGDD HENVNGGRIL FPFGDHHLKQ ISSTAGHHEV LDHHQNKGQG NPTGYWNGLL  300
GGGSW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.117820.0root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
UniprotTISSUE SPECIFICITY: Expressed in the phloem of the mother plant, including in roots, stem, leaves and flowers, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4785021e-48AM478502.2 Vitis vinifera contig VV78X197834.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028961586.10.0dof zinc finger protein DOF2.5-like isoform X1
SwissprotQ433852e-63DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLA0A498JAR70.0A0A498JAR7_MALDO; Uncharacterized protein
STRINGXP_008376161.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.34e-58Dof family protein