PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000311595
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-YA
Protein Properties Length: 1852aa    MW: 206734 Da    PI: 7.5777
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000311595genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.37.8e-31588644158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    d p+YVNaKQy++Il+RRq+Rakle+ +kl  k+rkpylheSRh hA++R Rg+gGrF
  MDP0000311595 588 DGPIYVNAKQYHGILRRRQSRAKLEAXNKL-LKARKPYLHESRHLHAVNRVRGTGGRF 644
                    57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.1280.508.1E-5843No hitNo description
SuperFamilySSF813831.2E-6855IPR001810F-box domain
TIGRFAMsTIGR016405.8E-12103321IPR017451F-box associated interaction domain
PfamPF082681.2E-5223321IPR013187F-box associated domain, type 3
SMARTSM005212.2E-35586647IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.166587647IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.8E-22590612IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.6E-26590644IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860592612IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.8E-22621644IPR001289Nuclear transcription factor Y subunit A
SuperFamilySSF534741.36E-338441030IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18208.8E-328441027IPR029058Alpha/Beta hydrolase fold
PfamPF003263.7E-98621027IPR001375Peptidase S9, prolyl oligopeptidase, catalytic domain
PfamPF121652.6E-5110411147IPR021998Alfin
SuperFamilySSF579031.04E-1611971259IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.5E-1612011255IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500169.53512051257IPR019787Zinc finger, PHD-finger
SMARTSM002493.3E-912071255IPR001965Zinc finger, PHD-type
PROSITE patternPS01359012081254IPR019786Zinc finger, PHD-type, conserved site
CDDcd156131.00E-3112081257No hitNo description
PfamPF006284.1E-912081256IPR019787Zinc finger, PHD-finger
Gene3DG3DSA:3.40.50.3009.2E-912561327IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:1.25.40.204.3E-4013581594IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.07E-3713581573IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029735.72913891567IPR020683Ankyrin repeat-containing domain
SMARTSM002482413891418IPR002110Ankyrin repeat
PfamPF127963.5E-1413941482IPR020683Ankyrin repeat-containing domain
CDDcd002047.07E-2814211549No hitNo description
PROSITE profilePS5008811.27414231444IPR002110Ankyrin repeat
SMARTSM002486.3E-414231453IPR002110Ankyrin repeat
PROSITE profilePS5008810.28614571483IPR002110Ankyrin repeat
SMARTSM002480.0314571486IPR002110Ankyrin repeat
SMARTSM002481714911520IPR002110Ankyrin repeat
PROSITE profilePS500889.72515281561IPR002110Ankyrin repeat
SMARTSM002480.04815281558IPR002110Ankyrin repeat
PfamPF000231.8E-415281560IPR002110Ankyrin repeat
PfamPF139622.0E-2516401759IPR026961PGG domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0048364Biological Processroot development
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0019866Cellular Componentorganelle inner membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008236Molecular Functionserine-type peptidase activity
GO:0008270Molecular Functionzinc ion binding
GO:0042393Molecular Functionhistone binding
Sequence ? help Back to Top
Protein Sequence    Length: 1852 aa     Download sequence    Send to blast
MASSSPTLPS DVIRSEILTR ISPETLGSCR LVSKEWYHAA YDSFKLFCEK TNTTYGFFLQ  60
SKFYPNRVCT FLPVEDNNID NSKTISLRFL HFPYSIEAAD RGLLVGVSHK NHKIPRYFVC  120
APTTQYWKQI PNPKTRYFTR GTAIAVLRSS SNSNPVLSSW FKIIRLSEPE TNPSFDNHYI  180
XEVFDSNTWS WKQLNDXILP HGVLLGTNSP VSACCALYWH LTNNQILAFY QDKETWETFA  240
LPHPMCNNVH WKYSLTAYQG RLALVRKEGG DXFTEYWIME DHREKIWSER KRLSTRGTSV  300
IAFCDSDVAL MKEYGKMIFY NFKECRVSKL VELESWHEPD YIFSFPATKN PGNIADHRSS  360
LAARXTEYIF QPDGSVTQNN VLAFVAARAS EDGKVEKLSP LSVSGLYLFW XSTIELYIPT  420
TQKLDKNIFN QSSVAMPLYT NSMSWNPSEQ QVPQPLSKDV SFKVKFPPQV HHGSKHLGLQ  480
LQTDQGSSSI TQSIGHSQDQ CNSSDSGEVQ TCGKDAEGNM KPVFLQSNQD FMLNPSQVSH  540
GNLMGCVPYP YVDPYFSGFL TAYGPQAMSH MLGMAPTRVP LPXDLAQDGP IYVNAKQYHG  600
ILRRRQSRAK LEAXNKLLKA RKPYLHESRH LHAVNRVRGT GGRFLSTKRQ SDQNPSSXTH  660
HVSDSISSHQ KDTGGTESNH SGSSDFLPSV ALHPDMTSVS NTNDNFQQPD RRFSXIPPHM  720
SGAMQFPGGF MRAGNQHCAS VVRWLKKELE IRTTRKTKPS KKLHTPSSHG VVRERAAVRS  780
GRPGGGRHDI ARRXPGAPRL RPRLAGSHQV LPDYPRPPPP HXRGRLAPVL RRRSPPRLVH  840
QALPXLPSYG ASEGYPSQHG IIKDAQVALD HLSQRTDIDT SRIXVFGRSL GGAVGTVVAK  900
NNPDKVAALI LENTFTSILD LVGVLFPFLK WFIGGSGSKG PKVLNFLVRS PWSTIDVIGE  960
VKQPILFLSG LQDEMIPPSH LQMLYAKAAA HNKRCVFVEF PTGMHMDTWL AGGDXYWRTV  1020
QEFLQQHVPA KKDDXSSHSD SDVERFYQQC DPEKENLCLY GFPNEEWEVN LPAEEVPPEL  1080
PEPALGINFA RDGMQERDWL SLVAVHSDAW LLSVAFYFGA RFGFDKTERK RLFTLMNDXP  1140
SIFEVVAGIE KRQSKEKSSV SNNSIHRPKS SSKGRGSESV KYAXAMPKNE DGGLDGEGDD  1200
DEHGETVCGA CGESYAADEF WICCDICEKW FHGKCVKITP ARAEHIKHYK CPSCSNKRYT  1260
SNGEGEEEED VSVIKYMTDA VLLGEIIDGE EADLQSHSVA MVDDAHERAL STDILLGALR  1320
EIARARRPHG FKLRISCASQ LTQKRKTSGE DGEDGEKLMD AAMAGDTGAL NDLIAEDPLV  1380
LDRALVSCVA ETPLHVASLL GHLAFVTELL SRNPELASEL DSQGSTPLHL AAAKGHVEIV  1440
KELVLADPGA CAVRNLDGRT ALHVAAAKGR VKVVXELVGV GSEWTRALTD XGETALHLCV  1500
GRNRLEGLKV LVKAVGKDDE FVNWKDCDGN TVLHIAVAKK LIEIIKFLLF ETGVXVNALN  1560
ASSATALDIL MQSPRDLRDM EIEDXLRGAG AQSARDXRNI EHDWVXAPTK ERQILRHRGS  1620
ALSSKVSESM KPAENKKPTD WLGRKRSSLM VVASLLATVA FQAAITPPGG VWQDDQQVDE  1680
NGNPVENPHT VGTSVMAYKQ GKEYGLVMIF NTISFLASLS IILLLVSGLP IKRRRWMWIQ  1740
MVIMWVAVST LVVTYFITLR HMSPSEENVQ IVLRXVTEIS GWTWLTLMXV VFFGNVIRMN  1800
LWILRKYGYI KPKDVEPSNV DDELELGEVT NLRGSEMACC SVLCSICHPC KF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xvj_A8e-49101811484133PHD finger protein ALFIN-LIKE 7
5xvj_B8e-49101811484133PHD finger protein ALFIN-LIKE 7
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.129240.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.11e-29nuclear factor Y, subunit A7