PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000311914
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ARR-B
Protein Properties Length: 738aa    MW: 80266.5 Da    PI: 5.8912
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000311914genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.44.3e-25232282152
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                    kpr++W+ eLH++Fv av+qL G +kA+Pk+ile+m+v+gLt+e+v+SHLQ 
  MDP0000311914 232 KPRVVWSVELHQQFVTAVNQL-GLDKAVPKRILEMMNVPGLTRENVASHLQA 282
                    79*******************.*****************************7 PP
2Response_reg74.44.2e-25481561109
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                    vl+vdD+ + +++l+ +l +  y +v+++++++ al+ll+e++  +D++l D+ mp+mdG++ll++i  e  +lp+i+++a g  + + + ++ Ga
  MDP0000311914  48 VLVVDDDTTCLRILELMLLRCLY-QVTTCSEATVALNLLRERKdcFDVVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADGRTSVVMRGIRHGA 141
                    89*********************.***************99999***********************6654.8*********************** PP

                    SEEEESS--HHHHHH CS
   Response_reg  95 kdflsKpfdpeelvk 109
                     dfl Kp+ ++el +
  MDP0000311914 142 CDFLIKPVREAELKN 156
                    ************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.56E-3445167IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.5E-4045180No hitNo description
SMARTSM004485.7E-2946158IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.2247162IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.6E-2248156IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.66E-2649161No hitNo description
Gene3DG3DSA:1.10.10.602.2E-25229283IPR009057Homeodomain-like
SuperFamilySSF466893.05E-16229285IPR009057Homeodomain-like
PROSITE profilePS512949.652229288IPR017930Myb domain
TIGRFAMsTIGR015571.4E-21232282IPR006447Myb domain, plants
PfamPF002492.8E-7234284IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MAALQRVAQS SVSTTASSYG SCKGGGGVLS PSAVEMAVPD RFPAGLRVLV VDDDTTCLRI  60
LELMLLRCLY QVTTCSEATV ALNLLRERKD CFDVVLSDVH MPDMDGFKLL EHIGLEMDLP  120
VIMMSADGRT SVVMRGIRHG ACDFLIKPVR EAELKNIWQH VVRKKWNGSK ELEHSGSLED  180
NDPHKRGNND IEYTSSVNEG SEVSLKGQKK RINAKEDDDG DTENDDMSTS KKPRVVWSVE  240
LHQQFVTAVN QLGLDKAVPK RILEMMNVPG LTRENVASHL QAWLYLKRLN GVAQQQSGIA  300
NAFCGPADSN GKLGSLSRFD FQTLATSGQI PPQTLAALQA ELLGQPAGNL VPAMDQPALL  360
HASLQGAKHP PVEHGVPFVQ PFIKSQSNVS KQFPQPVISA EDVSPGFGQW RSNNCSTVAP  420
SNYHGGSSVQ NSNFLMGVVQ QEQRQHDRTQ QQSALIEPCR SFNVQPSCLV VPSQSSTGFQ  480
AGNSPASFNQ SSSFNKSTVI DYSLLSDQSN NSLNIGHIPT GNLKITSTLG GYSAPGSISP  540
TSCILNTDNN STSYQNSAAT FSDSRELPGV LHNTSNSQGF YVDKSGEMLD QGPLRNLGFV  600
GKETCIPSRF AVDDFESQMS NLNRGRIQVE NSGALVKQEP IVDYVDNEKL GIPILQQYSS  660
SVYFVVSRCL LISMTRTDCF TLSKCSVEIA VEVCVLFLRL DLIDVPAPDS GAERPLASET  720
LEKLRTNVGE YQCRSGGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-18228283156ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.163100.0fruit| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008381754.10.0two-component response regulator ORR21-like
SwissprotA2XE311e-154ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-154ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A498HFV30.0A0A498HFV3_MALDO; Uncharacterized protein
STRINGXP_008381754.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118082433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-108response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]