PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000312382
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 529aa    MW: 59780.2 Da    PI: 10.1731
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000312382genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF818.1e-26959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   kri+n + r+vtfskRrng+lKKA+ LS+LCdaevavi+fs++gk ye++s
  MDP0000312382  9 KRIDNPTSRHVTFSKRRNGLLKKAFXLSILCDAEVAVIVFSHSGKAYEFAS 59
                   79***********************************************86 PP
2K-box58.52.8e-20851601085
          K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                     ++++e++++e + L++ i+nL+  ++hl Ge+L++L ++eL+qLe+qL++++++iRsk  +++  +++ l++k  
  MDP0000312382  85 RARTMEYWRNETEELRRSIQNLEMRLKHLAGEELSTLGMQELKQLERQLKTGVERIRSKSRQIIXXNVNLLKRKVT 160
                    56789*******************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.726161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-37160IPR002100Transcription factor, MADS-box
CDDcd002651.31E-34270No hitNo description
SuperFamilySSF554551.83E-28277IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-27323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-273859IPR002100Transcription factor, MADS-box
PfamPF014862.1E-1688162IPR002487Transcription factor, K-box
PROSITE profilePS5129712.24489221IPR002487Transcription factor, K-box
SuperFamilySSF511611.94E-33297458IPR011004Trimeric LpxA-like
Gene3DG3DSA:2.160.10.101.4E-33297458No hitNo description
CDDcd046451.11E-64298456No hitNo description
PfamPF001327.5E-4303331IPR001451Hexapeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MGRGKVELKR IDNPTSRHVT FSKRRNGLLK KAFXLSILCD AEVAVIVFSH SGKAYEFASH  60
DINRTIAMYR REVGLPEPNN STFRRARTME YWRNETEELR RSIQNLEMRL KHLAGEELST  120
LGMQELKQLE RQLKTGVERI RSKSRQIIXX NVNLLKRKVT TLVISYLITL FRLIQMNCYF  180
GRAEIVVRVI KLYKMLLQHK ELREENKRLQ KRVKLQEFHF ADVTSSTSTT TLGANACMSA  240
FPRRALTSFS SSAQPSAFHR TFSAEAAKAA AITPSPDRVK WDYRGQRRII PLGQWLPKIA  300
VDAYVAPNVV LAGQVTVCDG ASVWPGSVLR GDLNKITVGF CSNVQERCVL HAAWSSPTGL  360
PAETSIERFV TIGAYSLLRS CTIEPECIIG QHSILMEGSL VETHAILEAG SVVPPGRRIP  420
TGELWAGNPA RFVRTLTHEE TLEIPKLAVA INDLSKEYFQ EFLPYSTFHR RVSLYRLVGG  480
FPCKEISSSE TAELSFSGVY LVFRSDCSEI STDNRMSNSS FRPALVRKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ixc_A9e-3228945926191Hexapeptide transferase family protein
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.55880.0bud| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1640130.0KP164013.1 Pyrus pyrifolia clone PpTM8-1 TM8-like MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3Q7FGU80.0A0A3Q7FGU8_SOLLC; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.21e-37MIKC_MADS family protein