PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000312598
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 1674aa    MW: 187443 Da    PI: 8.3915
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000312598genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.8e-1710821167899
                     -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3    8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99  
                     s  l+s rl +p +f+++++g +  s  ++l  +sg +W+v+l   ++ g+ +l +GW  Fv+++ ++ gDf++F++dg+ +f  +v +f++
  MDP0000312598 1082 SADLSSERLKIPERFMRHMEGRT--SGLVSLFGPSGSEWSVEL--IQQNGGLFLHRGWPAFVRDHYVECGDFLIFRYDGDLCF--TVLIFDQ 1167
                     56788999********8888884..458***************..888889****************************9999..9999987 PP
2B341.13.1e-13134214191797
                     E--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
             B3   17 vlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97  
                      +p kf  +h   ++++++++l++ +g+sW+v+    ++   +++l +GW  Fv+ n+++ gD+++F+l++  efe++v++ 
  MDP0000312598 1342 NIPYKFSVAHL--PNCKVKIVLQNWKGESWTVNSVPsNRVHTSHTLCGGWMAFVRYNDIQLGDICTFELVR--EFEFCVHIQ 1419
                     59999999996..45999***************9555666667*************************987..677788875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF533839.63E-13155393IPR015424Pyridoxal phosphate-dependent transferase
Gene3DG3DSA:3.40.640.104.3E-30181392IPR015421Pyridoxal phosphate-dependent transferase, major region, subdomain 1
SuperFamilySSF1019361.63E-2210721170IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-2210731170IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.52210751168IPR003340B3 DNA binding domain
CDDcd100171.85E-1810751166No hitNo description
SMARTSM010199.0E-1410771168IPR003340B3 DNA binding domain
PfamPF023623.4E-1510821167IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-1912901420IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.0E-713271422IPR003340B3 DNA binding domain
SuperFamilySSF1019366.08E-1813371419IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.39213431422IPR003340B3 DNA binding domain
CDDcd100175.36E-1413431418No hitNo description
PfamPF023621.7E-1013431419IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 1674 aa     Download sequence    Send to blast
MHLSVWKPIS HCAALLMEKK TRRRRDDGSG LAVDAKRKPS VLRQLQENRL REALEEASED  60
GSLSKSQDID SDQTPNQDGS FGRSRSLARL HAQKEFLRAT ALAADRTFST DDSIPHLREA  120
FNKFLTMYPK FQSSEKIDHL RAEEYNHLSE SLARVCLDYC GFGLFSNLQA QLYWETCSFT  180
LSEITANLSN HALYGGAETG CVEHDIKTRI MDYLNIPEHE YGLVFTVSRG SAFKLLAESY  240
PFGTNKKLLT MFDHESQSVN WMAQKAKEKG AKVYSSWFKW PTLKLCSREL KKQIANKRRR  300
KKDSATGLFV FPVQSRVTGA KYSYQWMALA QQNNWHVLLD AGSLGPKDMD SLGLSLFRPD  360
FIITSFYRVF GSDPTGFGCL LIKKSVMASL QSQGGRTGTG IVRILPVFPQ YLSDSVDGLD  420
GLGGIENDAV HSNKELVPET HGGSHMPAFS GVFTSNQVRD CFETEMDQDS DRDGSTIFEE  480
AESISIGEVM KSPIISEDES SDNSYWIDLG QSPFGSDHSD QHMRQKTGSP LPPTWFSGRK  540
INKFFSPKVT PKSPKSPIYD DDDKRAHLRL HGDPVLSFDA AVLSVSHEPD HAKGIPEGDL  600
FAETDAASGN DREVQEEPEI REDSMANNSR LLSTEDGFRP NNQTSGLKHS NFELSSTSEI  660
CQESKDSAIR RETEGDFRLL GRRETKVFSG RRFFGLEEGD RELSMGHRVS FTIEDNHRGK  720
SSLISEPGET SMTTLGDDEF MSEGEYGDEQ EWGRREPEIV CRCLDHVNML GLNKTTLRLR  780
YLINWLVTSL LQLRLPGSDE GLEVPLVQIY GPKIKYERGA AVAFNVRQGS GRGLVHPEVI  840
QKLAEKNGIS LGVGILSHVR IVDGPKQQHC GGLDLADTSL CKPMVNGRQG GKNMFFRVEV  900
VTASLGFLTN FEDVYKMWAF VAKFLDSSFA EVEGDELPPV PEESETTFWD TGMSKEYPPA  960
SGVVANRTAT SSKAQSYKHR QCSIGKGLLK TTKWLTSRKQ SKRKMAKTHG FVNKAYVTIP  1020
APFARENGLR AEDCGRDFAK SRDIGGRETT LHVLQRALGG KLISMAEEAR NVRSPHFFAF  1080
YSADLSSERL KIPERFMRHM EGRTSGLVSL FGPSGSEWSV ELIQQNGGLF LHRGWPAFVR  1140
DHYVECGDFL IFRYDGDLCF TVLIFDQSAC EKEAAFRFGY GQDSRNFDKY MYMGRKRRRE  1200
EVASSGNKLV DGAVKKIRNG SSQFRSECID EGREEATCST EKNPLENPGL DVVSYKAKES  1260
IQNMCGKGDG LNVNGRLCMQ MSSAHEVAPS FSSSNPYFVR IIKSFNISGS YTLMELTTIT  1320
QRLCPWFLIP SFRFGVWKMS TNIPYKFSVA HLPNCKVKIV LQNWKGESWT VNSVPSNRVH  1380
TSHTLCGGWM AFVRYNDIQL GDICTFELVR EFEFCVHIQK GETSSWLSPG LAVTTHKTIK  1440
GLSKKMKGNS PKVLSKSIRE IADKLSSKKD QDAAFINDTR KYGSTSRSLT KAALAQSKVA  1500
SKKLVNRRKK VVDDELDSKS SGLRIKLTLD EERIARSFTS CFPNFVKIMK KFNISGSYTL  1560
TIPKHVARAR GLVSVAGLPS GETNASRSDR KIVACSTSCQ GRSPSADGAG MWWQHLLACL  1620
GFEVAIGLSS FSEKKAFLQT NDCVTEELND HAFADTVKPK YFEWNRKTNR FRAP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297302RRRKKD
2677686RLLGRRETKV
39971004RKQSKRKM
411941198RKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.137640.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009365641.10.0PREDICTED: uncharacterized protein LOC103955467
TrEMBLA0A498HU680.0A0A498HU68_MALDO; Uncharacterized protein
STRINGXP_008378464.10.0(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.12e-14B3 family protein