PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000312617

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Trihelix

Protein Properties

Length: 386aa MW: 41824.7 Da PI: 9.0663

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000312617	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.1	1.5e-15	22	114	2	72
trihelix 2 WtkqevlaLiearremeerlrrgk......................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 Wt e++ Liea++ ++er +++ ++ +W++v ++++++g+ rs++qC++kw+nl ++ykk++e e+k t MDP0000312617 22 WTVGETMILIEAKKMDDERRMKRSgggeggssssggtdqttrsmgkPAELRWKWVEDYCWKKGCLRSQNQCNDKWDNLMRDYKKVREYERKIT 114 ***********96666555543355566667777777777777799***************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.226	14	100	IPR017877	Myb-like domain
Pfam	PF13837	1.4E-11	21	112	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MAGQGGNGTS SVIMRDYRKG NWTVGETMIL IEAKKMDDER RMKRSGGGEG GSSSSGGTDQ 60 TTRSMGKPAE LRWKWVEDYC WKKGCLRSQN QCNDKWDNLM RDYKKVREYE RKITNVGEGK 120 GEEGRASYWK LEKNERKERN LPTNMVLQIY EALVDVVERR EAAGGGGYQI RGHQVVGGAS 180 VSGSNVGISP NIGYGLERPI ISTTGVHQQP SSSLPPPPPP VLQHHHHQIS VPTIAALPLL 240 PPAPLAAQPP PALQYAQVMP TVDSDTSEHS DSPAKRRRRA SGRGGGGGGG DQGGTSGTVS 300 ASTSSEVGTA IAGGASVIAE ALQGCEEREE RRHREMLSLH ERRLQIEETK TEINRQGING 360 LIDAINKLAN SIHDLASNKN QQPPPN

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MAGQGGNGTS SVIMRDYRKG NWTVGETMIL IEAKKMDDER RMKRSGGGEG GSSSSGGTDQ  60
TTRSMGKPAE LRWKWVEDYC WKKGCLRSQN QCNDKWDNLM RDYKKVREYE RKITNVGEGK  120
GEEGRASYWK LEKNERKERN LPTNMVLQIY EALVDVVERR EAAGGGGYQI RGHQVVGGAS  180
VSGSNVGISP NIGYGLERPI ISTTGVHQQP SSSLPPPPPP VLQHHHHQIS VPTIAALPLL  240
PPAPLAAQPP PALQYAQVMP TVDSDTSEHS DSPAKRRRRA SGRGGGGGGG DQGGTSGTVS  300
ASTSSEVGTA IAGGASVIAE ALQGCEEREE RRHREMLSLH ERRLQIEETK TEINRQGING  360
LIDAINKLAN SIHDLASNKN QQPPPN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008358583.1	0.0	uncharacterized protein LOC103422312 isoform X1
TrEMBL	A0A498IYR3	0.0	A0A498IYR3_MALDO; Uncharacterized protein
STRING	XP_008358583.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6804	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	3e-55	Trihelix family protein

Link Out ? help Back to Top
Phytozome	MDP0000312617