PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000312744
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family SRS
Protein Properties Length: 603aa    MW: 62777.7 Da    PI: 7.162
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000312744genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702218.51.5e-673905503153
         DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaesk 97 
                    s t++CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpaa+rrerq + aaa   a +++ +++++k++r l  ++q+++s+t++s+++++
  MDP0000312744 390 SSTMTCQDCGNQAKKDCTHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMSAAAGGGAGSNSgSTSSAKKPR-LIGASQTTTSHTSTSNTTPP 484
                    6789*************************************************9999999999884445555555.5699999************* PP

         DUF702  98 keletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                    ++ +tss          lP +v+++avf+cvrv++v+dge+e+aYq++v+i+GhvfkG LydqG++
  MDP0000312744 485 RSYDTSSshqdagfkdpLPGQVRAPAVFKCVRVTAVEDGEDEYAYQAVVKINGHVFKGXLYDQGVD 550
                    *****999********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051426.0E-61392550IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016237.6E-27394436IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016249.3E-28502549IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MPNEGSRLKR DDPWTAILAH TDPSCYGGEW HCCSPTSSIS TSPREPIKDV TLPEDVGLQI  60
LYQKLGRHHD KVVRGMGKVR VREIGASSSS STIGHVIALT EEVEILKDGQ LHARMVWTVN  120
GDGDGDGDVV ATTRRLPSDS GAFADWVGSS SSNNAAATGR STTHHPDIDV LSLGFNAGPA  180
PAGPSSAXPS TMSMWSSXPS SRPLTYGHVP PEMAGMVGLR DVFVVAPAAA YHHNTHLHHH  240
YGHDPNLLSS SDHHHSINAS NNPATALGVG VIPLLTAAPC LAPPNMSNVD DDDEDTHTPA  300
GMSMGMGMSM GMGMMSGGHQ RNNRSSSAAA AAGGGGGIQL WQQNPPHFFK KTHHEAAVTT  360
DLGVAHLNQG GGGGGNNVIN AGSAAASSGS STMTCQDCGN QAKKDCTHRR CRTCCKSRGF  420
DCATHVKSTW VPAARRRERQ LMSAAAGGGA GSNSGSTSSA KKPRLIGASQ TTTSHTSTSN  480
TTPPRSYDTS SSHQDAGFKD PLPGQVRAPA VFKCVRVTAV EDGEDEYAYQ AVVKINGHVF  540
KGXLYDQGVD GRDGFPNISE LHLGGGGNGR RNGASSPILD PSDVYAASGA GLLGGSNFGN  600
PIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008363042.20.0protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A498INV00.0A0A498INV0_MALDO; Uncharacterized protein (Fragment)
STRINGXP_008363042.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65043351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.26e-71Lateral root primordium (LRP) protein-related