PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000314321

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 353aa MW: 40926.4 Da PI: 9.2764

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000314321	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.9	1.1e-05	83	127	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++Er RR++ ++++ L +llP+ ++ +K i++++ I++L MDP0000314321 83 HMINERMRREKQKQSYLALHSLLPNG-----TRSDKNWIVQMTAMNIQQL 127 7899********************96.....6788888888888888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.14E-9	76	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.639	78	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	0.00109	82	129	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.1E-5	83	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MDQYILKALE GELLWYDERP PVVPNQSAFV LYTNTPVIDK LPSDVTKSMN TNKRMLQFLR 60 KSWQPATARN EAEPDGKHRG FRHMINERMR REKQKQSYLA LHSLLPNGTR SDKNWIVQMT 120 AMNIQQLKRY KEELIKRNVE LEALLVENEK ERVKWSKIRL KVANPTSGIE SMLEVLKCLQ 180 YLGLKARNVH SNFSPEEFSA ELEIETKIGA AEIEEAVQET LNKAEXKLRF PFPGRREEDE 240 MDRKLEAEKS RXKRENRQQE IRKGYXHNGL LKTLYGFQPE WDSXVRGGIW VPGNCVHXES 300 KFCXDNTLKL ERNIGIVGGT NQGILFAALX GCADLXHIVR GGAKPXWXCG EFW

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MDQYILKALE GELLWYDERP PVVPNQSAFV LYTNTPVIDK LPSDVTKSMN TNKRMLQFLR  60
KSWQPATARN EAEPDGKHRG FRHMINERMR REKQKQSYLA LHSLLPNGTR SDKNWIVQMT  120
AMNIQQLKRY KEELIKRNVE LEALLVENEK ERVKWSKIRL KVANPTSGIE SMLEVLKCLQ  180
YLGLKARNVH SNFSPEEFSA ELEIETKIGA AEIEEAVQET LNKAEXKLRF PFPGRREEDE  240
MDRKLEAEKS RXKRENRQQE IRKGYXHNGL LKTLYGFQPE WDSXVRGGIW VPGNCVHXES  300
KFCXDNTLKL ERNIGIVGGT NQGILFAALX GCADLXHIVR GGAKPXWXCG EFW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008362023.2	1e-168	transcription factor bHLH92-like
TrEMBL	A0A498HK44	1e-169	A0A498HK44_MALDO; Uncharacterized protein
STRING	XP_008362023.1	1e-170	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12572	27	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	8e-48	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000314321