PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000314333
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 510aa    MW: 57167.4 Da    PI: 8.3664
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000314333genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.72.5e-19128218199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    f+k l++s+v +  ++ lp  f+++h  +  +++t+tledesgr+++ k+i +k++    l++GW++F+ +++L egD++ F+l++ ++f  +v +
  MDP0000314333 128 FVKSLVRSHVASCFWMGLPSLFCKSHLPD--KDITMTLEDESGRQYQSKYIACKTG----LSSGWRQFAASHNLLEGDVLAFQLVEPTKF--KVYI 215
                    89************************644..678****************777776....***********************9876666..9998 PP

                    E-S CS
             B3  97 frk 99 
                    +r+
  MDP0000314333 216 IRS 218
                    886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.1E-21120219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-24121220IPR015300DNA-binding pseudobarrel domain
CDDcd100176.34E-27126217No hitNo description
PROSITE profilePS5086313.225128219IPR003340B3 DNA binding domain
SMARTSM010193.2E-23128219IPR003340B3 DNA binding domain
PfamPF023623.4E-17128218IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MARNVKNAKP QTPLSKEDGH LTQPPLPKPR LRPKPATNPK PSSLPTGKLK KPGKPKEQEV  60
EYSMPMKELS NTQITKQMLS HAGXSPAISN XQYDFPVDGS PSRGQAKSSA VIRAQEVRSK  120
LEPQFPSFVK SLVRSHVASC FWMGLPSLFC KSHLPDKDIT MTLEDESGRQ YQSKYIACKT  180
GLSSGWRQFA ASHNLLEGDV LAFQLVEPTK FKVYIIRSNG LAEVDGDLXL PNLDNNTKQK  240
DAGKFINLSV YKDNAETSTX PCNDSTKKXA ETSTTPWNDS NRKRAHSPQL VAPKKKKIGL  300
QRAKQSETDS EEVGSEVSED LKSPVATLQF EDIRSYENFN ILVDGLFLDP EFPEDVRRKY  360
YKLCRSQKAF LHENVIKGMN HNMIIGAISE TVNIADSIEA CKVTALRDDF VSWDKYLTAF  420
ELLGMNVGFL RERVCRLANL ADXSEAAVEA KMFKEATIER SQAGIGLRNI EMKLEELMEA  480
CDEFGAAIES LRSKXEINKL RFQEEVTAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1281296RKRAHSPQLVAPKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.153520.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009375697.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLA0A498HUQ70.0A0A498HUQ7_MALDO; Uncharacterized protein
STRINGXP_008361398.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-36B3 family protein