PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000314593
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-YA
Protein Properties Length: 281aa    MW: 30922.7 Da    PI: 8.9822
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000314593genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA52.22e-16162199139
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpyl 39 
                    +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k+rk  +
  MDP0000314593 162 EEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKARKXLI 199
                    69****************************.99999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.0E-9160210IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115218.175161196IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.4E-12163198IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860166186IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MPAKSNEDLH IEHGXETALR PIYSQPWWRG VGNGTASSMV DHSSSMVMNG AMQAQTNARL  60
DGRANFNKEF RTTVESQXDG NSGSENQHTK SVSSSVVPAM GQHVDPNSQM ELVGHSIVMS  120
SYPYADPQYG GMLTPYGPQT MLXPHFYGMH PGRMPLPPDM EEEPVYVNAK QYHGILRRRQ  180
SRAKAELEKK LIKARKXLIS CRRCSRXAXS LLEXTXLXNV SIXQLILGFG YXVIIGGGAE  240
GDGGGXHVXL SLPSLALTPV VETVTKGISW ELKTRKLVVN X
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.164120.0fruit| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009364962.11e-133PREDICTED: nuclear transcription factor Y subunit A-4-like
TrEMBLA0A498KDG01e-139A0A498KDG0_MALDO; Uncharacterized protein
STRINGXP_008363319.11e-140(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89623144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.32e-18nuclear factor Y, subunit A1