PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000314836
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 232aa    MW: 26717.1 Da    PI: 10.528
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000314836genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.71.3e-1518105197
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                    ffk l     ++ + + +p  f+++ g+kk    +  l  +   sW+v++  r++ ++ + +++GWke vk + L++g+f+vF+++g++ f  +vk
  MDP0000314836  18 FFKPL--TPGFQ-NGMAIPIAFTRSLGEKKL---DKALIKSCQGSWDVQV--RRTCDGvFCFKQGWKEVVKNHSLEVGEFLVFEHKGNMVF--NVK 103
                    55666..33455.55**********987753...3455567888******..7777777***************************99999..666 PP

                    EE CS
             B3  96 vf 97 
                    v+
  MDP0000314836 104 VY 105
                    64 PP
2B336.67.8e-121362151788
                    E--HHH.HTT---..--SEEEEEETTS-EEEEEE...........EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
             B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliy.........rkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                    ++p +fa++ g+  ++   ++++d+ g+ W + + +           ++++y+ +kGW eF kan+Lk+ D+++F+l++  +
  MDP0000314836 136 TIPLDFARSTGILDKS--CMRVKDPFGKLWPMDIGIvkdkekieaAWSRRTYLKSKGWIEFYKANKLKDADVCIFELIQVpK 215
                    89*****999555434..49**************664655555532233348888*********************997643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-1915108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.01115108IPR003340B3 DNA binding domain
CDDcd100172.76E-1416105No hitNo description
SuperFamilySSF1019367.85E-1716113IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.4E-1618108IPR003340B3 DNA binding domain
PfamPF023622.5E-1221104IPR003340B3 DNA binding domain
SuperFamilySSF1019361.53E-14116229IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-12116229IPR015300DNA-binding pseudobarrel domain
CDDcd100179.62E-11117229No hitNo description
PROSITE profilePS5086310.024120231IPR003340B3 DNA binding domain
SMARTSM010190.019122220IPR003340B3 DNA binding domain
PfamPF023626.3E-10135216IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MADWSRFMAR SPPFPRKFFK PLTPGFQNGM AIPIAFTRSL GEKKLDKALI KSCQGSWDVQ  60
VRRTCDGVFC FKQGWKEVVK NHSLEVGEFL VFEHKGNMVF NVKVYEPLGC XKXFPPPSFR  120
LIMAKTHWNV KCPSATIPLD FARSTGILDK SCMRVKDPFG KLWPMDIGIV KDKEKIEAAW  180
SRRTYLKSKG WIEFYKANKL KDADVCIFEL IQVPKSRSKP VIMNVKIFRF GS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008339373.31e-169B3 domain-containing protein REM8-like
STRINGXP_008339373.11e-163(Malus domestica)
STRINGXP_008368177.11e-163(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14574917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.12e-17B3 family protein