PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000315316

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Dof

Protein Properties

Length: 1189aa MW: 134159 Da PI: 9.2866

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000315316	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.8	2e-37	908	968	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++al+cprC+st tkfCyynnyslsqPryfCk+C+ryWt+GG+lrnvPvGgg+rkn+k+s MDP0000315316 908 KDQALNCPRCNSTTTKFCYYNNYSLSQPRYFCKTCKRYWTEGGSLRNVPVGGGSRKNNKRS 968 7899*****************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF53098	3.41E-37	290	520	IPR012337	Ribonuclease H-like domain
CDD	cd06146	2.95E-61	300	503	No hit	No description
SMART	SM00474	8.4E-16	302	508	IPR002562	3'-5' exonuclease domain
Pfam	PF01612	6.4E-21	305	507	IPR002562	3'-5' exonuclease domain
Gene3D	G3DSA:3.30.420.10	6.1E-9	445	502	IPR012337	Ribonuclease H-like domain
Pfam	PF01927	2.4E-35	651	797	IPR002782	Mut7-C RNAse domain
ProDom	PD007478	7.0E-26	900	960	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.2E-32	909	966	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.491	912	966	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	914	950	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0008408	Molecular Function	3'-5' exonuclease activity

Sequence ? help Back to Top
Protein Sequence Length: 1189 aa Download sequence Send to blast
MSVKNEPDVN RTRNLLIWSQ TRYHCATDPL IWLSRESYLG FTEWVLWYFK QLMGLRSAFR 60 YGLQLYIRMG LGLNYRSPNP GFTQVHFRTK KIKPQIQKNS WTNAANVHCP RRFEREREAS 120 GLAFFYSTPP FFFRGEKEST GIXGSNDVVV EQSVVEIGPQ QSKRLRLTCS RGAISGKKNN 180 IFQEQREGGS GKKKKXEKTN WDSNEEEEFE KTNLGFRRES KSASGEEERT SGDREERARD 240 FSPTKLYRGF QRRWLSIGLI VERVKRNLHL THEKTQNPHR IMRNETSVTF SMDPQRPLNV 300 QLVSSTDSPE FTYLTRSLTR CRIIALDAEW KPIRTRTPQS SFPTVLLLQL ACQLGSRLGG 360 DSDESDDSVV FLLDLSTIHL PSIWELLRDA FVSPDILKLG FRFKQDLIYL SSTFSSNGCE 420 PGFDRVEPFM DITSIYNHLQ DKQHGRKASK QIKSLASICK EVLGISLSKE LQCSDWSCRP 480 LTEEQKTYAA MDAHCLIEIF NVFQAKVIKE GKLVRHPTEP HPPTVTLGLK VVFEKLDIYS 540 KIVRMKVHEA IDIARATASY VSPNIVTEEG MTLRIGHRNT LPMDEYLLKV VNEFGEKILL 600 KESDKTAKTS KRKAKGRSSE GLICNEKQGQ SFEDWQGPPP WDLALGGDGQ PKFLCDVMVE 660 GLAKHLRCVG INAAISYSKK PEPRQLIDQA NKEKRVLLTR DAKLLRHDYL INNHIYRVKS 720 LLKNEQLLEI IETFQLKISE DQLMSRCTKC NGRFIQKPLT TEEAVEAAKG FQRIPNCLFN 780 KNLEFWQCMD CNQLYWERGR AWVLGPSSIE GFKGLDKVGS TSAKPYTFSL LLHHRRHVSP 840 PYELSPGGIV GARTACPPPL LSSAVALAPS PYFRIPASAT APGIGVVKSM EDFSSTRPIT 900 ERRARPQKDQ ALNCPRCNST TTKFCYYNNY SLSQPRYFCK TCKRYWTEGG SLRNVPVGGG 960 SRKNNKRSNN SDSSSPSTSS AKKVAYDHDH HLTPHSNFPP QSASQNPNKI HFQGQDLNLA 1020 YPTADQDYDN NNITKLSFSI DNKTYHPNPS SSGTTTTSHH FSSAMELLTS TGIASRSLTS 1080 FVPMAATAVP DHSNNITMFS AGFPLQEFKP SGLSFSLDGF ESAGYGGCLQ GVQENTTSHA 1140 RLLFPTDQDF KQQIPSSTTT AEFDQHNNRG GEGDSGGGYW NGMLGGGSW

Sequence ? help Back to Top

Protein Sequence Length: 1189 aa Download sequence Send to blast

MSVKNEPDVN RTRNLLIWSQ TRYHCATDPL IWLSRESYLG FTEWVLWYFK QLMGLRSAFR  60
YGLQLYIRMG LGLNYRSPNP GFTQVHFRTK KIKPQIQKNS WTNAANVHCP RRFEREREAS  120
GLAFFYSTPP FFFRGEKEST GIXGSNDVVV EQSVVEIGPQ QSKRLRLTCS RGAISGKKNN  180
IFQEQREGGS GKKKKXEKTN WDSNEEEEFE KTNLGFRRES KSASGEEERT SGDREERARD  240
FSPTKLYRGF QRRWLSIGLI VERVKRNLHL THEKTQNPHR IMRNETSVTF SMDPQRPLNV  300
QLVSSTDSPE FTYLTRSLTR CRIIALDAEW KPIRTRTPQS SFPTVLLLQL ACQLGSRLGG  360
DSDESDDSVV FLLDLSTIHL PSIWELLRDA FVSPDILKLG FRFKQDLIYL SSTFSSNGCE  420
PGFDRVEPFM DITSIYNHLQ DKQHGRKASK QIKSLASICK EVLGISLSKE LQCSDWSCRP  480
LTEEQKTYAA MDAHCLIEIF NVFQAKVIKE GKLVRHPTEP HPPTVTLGLK VVFEKLDIYS  540
KIVRMKVHEA IDIARATASY VSPNIVTEEG MTLRIGHRNT LPMDEYLLKV VNEFGEKILL  600
KESDKTAKTS KRKAKGRSSE GLICNEKQGQ SFEDWQGPPP WDLALGGDGQ PKFLCDVMVE  660
GLAKHLRCVG INAAISYSKK PEPRQLIDQA NKEKRVLLTR DAKLLRHDYL INNHIYRVKS  720
LLKNEQLLEI IETFQLKISE DQLMSRCTKC NGRFIQKPLT TEEAVEAAKG FQRIPNCLFN  780
KNLEFWQCMD CNQLYWERGR AWVLGPSSIE GFKGLDKVGS TSAKPYTFSL LLHHRRHVSP  840
PYELSPGGIV GARTACPPPL LSSAVALAPS PYFRIPASAT APGIGVVKSM EDFSSTRPIT  900
ERRARPQKDQ ALNCPRCNST TTKFCYYNNY SLSQPRYFCK TCKRYWTEGG SLRNVPVGGG  960
SRKNNKRSNN SDSSSPSTSS AKKVAYDHDH HLTPHSNFPP QSASQNPNKI HFQGQDLNLA  1020
YPTADQDYDN NNITKLSFSI DNKTYHPNPS SSGTTTTSHH FSSAMELLTS TGIASRSLTS  1080
FVPMAATAVP DHSNNITMFS AGFPLQEFKP SGLSFSLDGF ESAGYGGCLQ GVQENTTSHA  1140
RLLFPTDQDF KQQIPSSTTT AEFDQHNNRG GEGDSGGGYW NGMLGGGSW

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.15966	0.0	bud\| cell culture\| root

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM486183	3e-46	AM486183.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X166878.4, clone ENTAV 115.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.3	3e-35	Dof family protein

Link Out ? help Back to Top
Phytozome	MDP0000315316