PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000315647

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NF-YC

Protein Properties

Length: 252aa MW: 27101.2 Da PI: 6.3706

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000315647	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	62.4	9.1e-20	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl div r MDP0000315647 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNAVHLKHCVQSYNVFDFLRDIVSR 86 5789**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.3E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	2.73E-21	4	94	IPR009072	Histone-fold
Pfam	PF00808	1.7E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMNAVHLKHC VQSYNVFDFL RDIVSRVPDY THGHSDAAAD DRTLSKRRKP PGDEGIDSDE 120 ELKRSKMLEI KNSSSSGRGR GRGRGRGRGP AQASATXXQA XATAXQAAPT ASQAAPTAAL 180 AAPTASQAAP TASQAAPTAA QASSAGPISE PKHEEYPGWS LSDVDGMAID PVQLANLSRR 240 LDEDEEDYDE EG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-23	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	147	RGRGRGRGRGR
2	139	148	RGRGRGRGRG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.11318	0.0	bud\| leaf\| root

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004307213.1	3e-92	PREDICTED: dr1-associated corepressor
TrEMBL	A0A498JEA7	2e-89	A0A498JEA7_MALDO; Uncharacterized protein
STRING	XP_008375484.1	4e-91	(Malus domestica)
STRING	XP_004307213.1	1e-91	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	4e-71	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	MDP0000315647