PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000315688
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 249aa    MW: 28230.2 Da    PI: 8.7468
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000315688genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.51.1e-203078149
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                   kr+e+k +r+vtfskR+ gi+ KA ELSvL++ae a i++ss+gk++ +
  MDP0000315688 30 KRVEDKNKRHVTFSKRKRGIFNKAAELSVLTGAETAAIVVSSNGKVFCF 78
                   799******************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.8152282IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-262281IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.81E-242494IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-182444IPR002100Transcription factor, MADS-box
PfamPF003192.2E-193178IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-184459IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-185980IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MAKGPDNKIT DKDIANGKKE RECRRRVEIK RVEDKNKRHV TFSKRKRGIF NKAAELSVLT  60
GAETAAIVVS SNGKVFCFGS PSPDAVIDLY LGDNTSLLPE GQPDNHLQNN NIHHSSSKKQ  120
IEDYVXASRR LKEAKILKGG KNSNNNGGEG GETGCSYGWW ERWIGMMSSL EELEEYRDAL  180
YKLKHNVEVR TNQMIRETSP SNHFSPLLFX DDIWSSPELS QGQGWPRNLI SSYDIDVKKY  240
DWNGVTYLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A3e-17161051299PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B3e-17161051299PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008342514.20.0agamous-like MADS-box protein AGL29
TrEMBLA0A498HDU10.0A0A498HDU1_MALDO; Uncharacterized protein
STRINGXP_008342514.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1658149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-18AGAMOUS-like 62