PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000316701
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 562aa    MW: 64280 Da    PI: 9.061
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000316701genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.8e-17221141100
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    ffk+  p+ +++   l++p kf++++g++   s  + l+ +sg +We+++  r + g +++ kGW eF +   L+ gD++vF+++g+s+f  +v +
  MDP0000316701  22 FFKII-PNEASRYTKLRIPEKFVNKYGEN--ISNPILLKLPSGVEWEIQV--RTCNGDIWFDKGWPEFSEFYSLDYGDSLVFRYEGNSKF--HVCI 110
                    66665.888888889***********977..6667***************..999999****************************9999..**** PP

                    E-SS CS
             B3  97 frks 100
                    f++s
  MDP0000316701 111 FDRS 114
                    *985 PP
2B351.71.6e-16208290288
                    EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
             B3   2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                    fkv +++++  ++ l+lp +fa++h ++++++s   +l  ++g +W+vk++y ++ +r++   GW  Fv +n+L++gD++vF l+++ 
  MDP0000316701 208 FKVVMQPSYIFHN-LILPSEFAKRHlMQQPTGS--AILCVPDGGTWRVKFTYANQISRFL--CGWLAFVGDNDLRVGDVCVFILIKDI 290
                    5777888888887.***********76666665..899999*********9999988865..69******************999874 PP
3B345.21.7e-143724561499
                    T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                    +++ +p +fa++ +++k++   +       + W v++i   + +s++  +++GW+ F+++n+L+egD+++F+l++ ++  l+v++fr+
  MDP0000316701 372 KLMHVPAEFAKRLKLQKKQ---IAALRVGEQLWPVNIIGynNEGSRHSHISGGWRVFAEENRLREGDVCTFELVEINDIVLKVHIFRR 456
                    56889*****999998654...99999999*******776555555578999*********************9889999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-2415114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-2316114IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-1720112No hitNo description
PROSITE profilePS5086314.52221114IPR003340B3 DNA binding domain
PfamPF023621.4E-1422113IPR003340B3 DNA binding domain
SMARTSM010195.2E-1822114IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-22201300IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-21201300IPR015300DNA-binding pseudobarrel domain
CDDcd100175.31E-21206300No hitNo description
PfamPF023626.4E-14208297IPR003340B3 DNA binding domain
SMARTSM010197.1E-12208302IPR003340B3 DNA binding domain
PROSITE profilePS5086311.815221302IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-18358456IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-16359456IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.434359457IPR003340B3 DNA binding domain
CDDcd100174.97E-14361455No hitNo description
SMARTSM010192.5E-15363457IPR003340B3 DNA binding domain
PfamPF023621.0E-12372456IPR003340B3 DNA binding domain
SuperFamilySSF813835.63E-12509559IPR001810F-box domain
Gene3DG3DSA:1.20.1280.502.3E-12511558No hitNo description
PROSITE profilePS501819.312511557IPR001810F-box domain
PfamPF006463.3E-8514558IPR001810F-box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MASLLPETDR ARPTFSATTP HFFKIIPNEA SRYTKLRIPE KFVNKYGENI SNPILLKLPS  60
GVEWEIQVRT CNGDIWFDKG WPEFSEFYSL DYGDSLVFRY EGNSKFHVCI FDRSATEIEY  120
PLPFPEVEES DEDDDESFKV LEDFPPCPRT RQKSPLPCPL PRMKKRISTS SSKKFGNKSS  180
SRRHPLTKNE KSIALQRCID FKSEKPHFKV VMQPSYIFHN LILPSEFAKR HLMQQPTGSA  240
ILCVPDGGTW RVKFTYANQI SRFLCGWLAF VGDNDLRVGD VCVFILIKDI PLSFEVVFYR  300
GKCKMGKING RHVSQRPCTS SLSASEVANM SKISNQVTQR PSCLKASRVL EAANKFITKN  360
PFFRATVRPP SKLMHVPAEF AKRLKLQKKQ IAALRVGEQL WPVNIIGYNN EGSRHSHISG  420
GWRVFAEENR LREGDVCTFE LVEINDIVLK VHIFRRRFGL AGCNRSMKRA SLGDDSMAAA  480
SSADVKMKRI KVEEEEEEMV IDYVDQDKLK GAGFSNLDDN LIFKVFKHVD TRTLGMASCV  540
SKQWHKMAED ERLWELICPC TS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A6e-1434845534141B3 domain-containing transcription factor VRN1
4i1k_B6e-1434845534141B3 domain-containing transcription factor VRN1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.68221e-114bud| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017183067.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A498KNH50.0A0A498KNH5_MALDO; Uncharacterized protein
STRINGXP_008354683.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-33B3 family protein