PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000316985
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GATA
Protein Properties Length: 550aa    MW: 60396.9 Da    PI: 5.1482
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000316985genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.27.4e-16159196136
           GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                    C +Cg ++  Tp++Rrgp+g+++LCnaCGl+++ +g++
  MDP0000316985 159 CKHCGISSksTPMMRRGPSGPRSLCNACGLFWANRGSM 196
                    *****99999************************9986 PP
2GATA48.98.7e-16398434135
           GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  MDP0000316985 398 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 434
                    *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101712.43191133IPR010402CCT domain
PfamPF062036.0E-1491133IPR010402CCT domain
SuperFamilySSF577161.19E-11151207No hitNo description
SMARTSM004019.8E-15153206IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.37153209IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.5E-15157200IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.33E-14158212No hitNo description
PROSITE patternPS003440159186IPR000679Zinc finger, GATA-type
PfamPF003201.7E-13159196IPR000679Zinc finger, GATA-type
PfamPF062031.8E-14326367IPR010402CCT domain
PROSITE profilePS5101712.58326368IPR010402CCT domain
SMARTSM004011.4E-9392445IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.524392440IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.33E-11393443No hitNo description
Gene3DG3DSA:3.30.50.101.8E-14396439IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.37E-14397441No hitNo description
PROSITE patternPS003440398425IPR000679Zinc finger, GATA-type
PfamPF003201.2E-13398434IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MTMPNPIPAC DNNNTGAAXS IDNAHIQYDS HTLEDGGIVX VXDGSSDGVY VQAVLLLLGG  60
NELSPNAQGT ELASQNPRAT EDFPRCSQPH RAASLFRFRQ KRKERCFDKK VRYGVRQEVA  120
LRMQRNKGQF SSSKKSDGDG NWSNGQESGQ EDTHAETFCK HCGISSKSTP MMRRGPSGPR  180
SLCNACGLFW ANRGSMRELS KRSHDVKRTE QGXXSDTKDL DSVTAIDAHN NLVPFSNAVN  240
PQPLEAGPFE EHGRGQIQVE DDDGDYEDGG DGMEDMEEVH VNPVQAVLLL LGGRDVPTGV  300
PTVEVSYDQN PRGVGDTPKR SNXSRRIASL VRFREKRKER CFDKKIRYTV RKEVAQRMLR  360
KNGQFASLKQ TSGASSWDST QSCPQDGTPQ PETVVRRCQH CGVSENNTPA MRRGPAGPRT  420
LCNACGLMWA NKGTLRDLSK GGRNLTMDNI EPGTPTEVKP SVVEGEFSRN QDEXGILDGL  480
SKNITEGSND ASVNPDEEEC IAFKDLHETA EDLTNSYPMG IVSSANDEQE PLAELANPSD  540
TDLDITTNFD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315320DTPKRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.139190.0cell culture| fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008378604.20.0GATA transcription factor 24-like
SwissprotQ9LRH61e-62GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A498JEZ90.0A0A498JEZ9_MALDO; Uncharacterized protein
STRINGXP_008378604.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.26e-65GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]