PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000317853

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C2H2

Protein Properties

Length: 684aa MW: 77249 Da PI: 9.4314

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000317853	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.7e-05	561	583	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y Cp+C+ F ++nL H++ H MDP0000317853 561 YICPKCPCEFVFSENLDAHMSEH 583 89*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	563	583	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence Send to blast
MEIPDDFCSY VSAPATPGRY CGSANNNVFF FSVPTSPRKR TISSTYDDYP TPPMTPYHDA 60 NSELGDFEFD TSNSFNLGSV DNVTSQQVKD LFDRKQREKR QTMAFADDLF CEGKVMPLAP 120 PLKLPPRLGQ KYTNQSPTPS TPRSPSSGIK MRVLHRRLWN DDFDPFMVAL QHVREEEKRG 180 KAETEARDIS DLNDQQNKXT GLQTPIHSPS VNSPSLLQSP TRLALPRGLE FARQVRLVGM 240 ELDHSERXSR PKLETETPKN NIAQESGGPC KKQTKGQKIR RLLLSALFGK PDDEDKKRKX 300 QTSEILKKPT FLRRLSLKSG RSTSCKAEKR ISNQLTKTTL VQFRPRLLLC MGYRASTDTP 360 PENPSENCRE RNHTVHFATT VSTSRSSGSN DRPPSKKKPM QGMSQLTLSQ FVAASXRTQV 420 NADWSQTIRL QKIENSLLWF MQPSFSPASE VSQYCSYGPS SHNQLRDPIN LNTIEFRGNK 480 EFARTPVSVS YPDSNFSFFT WNEPHLYMER SNLSELQSYK GSNPSVNLLA AQQDKKVGSN 540 PSLTDRIGTK RNLNKSKYTL YICPKCPCEF VFSENLDAHM SEHQRIEDQT NRMRSLDTAF 600 RLIGSECPLV HSQFIWNLEH LAGQKPEASS PNSDTMASSE DREKEDMARE QEMPLSSSAE 660 IKGSPSTKLD IKAVAISSII KSIK

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence Send to blast

MEIPDDFCSY VSAPATPGRY CGSANNNVFF FSVPTSPRKR TISSTYDDYP TPPMTPYHDA  60
NSELGDFEFD TSNSFNLGSV DNVTSQQVKD LFDRKQREKR QTMAFADDLF CEGKVMPLAP  120
PLKLPPRLGQ KYTNQSPTPS TPRSPSSGIK MRVLHRRLWN DDFDPFMVAL QHVREEEKRG  180
KAETEARDIS DLNDQQNKXT GLQTPIHSPS VNSPSLLQSP TRLALPRGLE FARQVRLVGM  240
ELDHSERXSR PKLETETPKN NIAQESGGPC KKQTKGQKIR RLLLSALFGK PDDEDKKRKX  300
QTSEILKKPT FLRRLSLKSG RSTSCKAEKR ISNQLTKTTL VQFRPRLLLC MGYRASTDTP  360
PENPSENCRE RNHTVHFATT VSTSRSSGSN DRPPSKKKPM QGMSQLTLSQ FVAASXRTQV  420
NADWSQTIRL QKIENSLLWF MQPSFSPASE VSQYCSYGPS SHNQLRDPIN LNTIEFRGNK  480
EFARTPVSVS YPDSNFSFFT WNEPHLYMER SNLSELQSYK GSNPSVNLLA AQQDKKVGSN  540
PSLTDRIGTK RNLNKSKYTL YICPKCPCEF VFSENLDAHM SEHQRIEDQT NRMRSLDTAF  600
RLIGSECPLV HSQFIWNLEH LAGQKPEASS PNSDTMASSE DREKEDMARE QEMPLSSSAE  660
IKGSPSTKLD IKAVAISSII KSIK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028954596.1	0.0	uncharacterized protein LOC114823279
TrEMBL	A0A498K6F8	0.0	A0A498K6F8_MALDO; Uncharacterized protein
STRING	XP_009350441.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11350	2	2

Link Out ? help Back to Top
Phytozome	MDP0000317853