PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000317857

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C2H2

Protein Properties

Length: 412aa MW: 46448.4 Da PI: 9.4685

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000317857	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00032	59	81	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H MDP0000317857 59 YSCSFCRREFRSAQALGGHMNVH 81 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.77E-6	56	85	No hit	No description
PROSITE profile	PS50157	11.219	59	86	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0098	59	81	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	61	81	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MEQARYWMWA KRKHNSSSSS NHDHHVQVPT SNDDSWEEQA FAEDAAGPLG GCIWPPRSYS 60 CSFCRREFRS AQALGGHMNV HRRDRARLXQ SPNDETALQN NLHHHQDHDH SVQNSANNPF 120 SSSLGSFQFP SRQVCALVYN PKNPSSDPGI IATSTPSSVS KLSAQLPCKK NCAEQTXIPP 180 SSSSSASSPQ SWSVLGTNRY HNNKSVARDH IEGEKISRVV EYSGSCRAKG DHHVANNDHN 240 LSVSLNLVVR CARTSVSSDG DEAIVSCKRR RTDDIPSSLP FFLKSGSVDR VHHLQPAEGF 300 EFSSSSIEDL DLELRLGDRP KPDLRIWXQE HVLTQPESLI GFRFRNLARS LIGEEGRTTR 360 KRKAKLRFGH LQHTTKLSQS LYRFEAXRAR SWKILIGDRE TTRVDXKMTW KP

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MEQARYWMWA KRKHNSSSSS NHDHHVQVPT SNDDSWEEQA FAEDAAGPLG GCIWPPRSYS  60
CSFCRREFRS AQALGGHMNV HRRDRARLXQ SPNDETALQN NLHHHQDHDH SVQNSANNPF  120
SSSLGSFQFP SRQVCALVYN PKNPSSDPGI IATSTPSSVS KLSAQLPCKK NCAEQTXIPP  180
SSSSSASSPQ SWSVLGTNRY HNNKSVARDH IEGEKISRVV EYSGSCRAKG DHHVANNDHN  240
LSVSLNLVVR CARTSVSSDG DEAIVSCKRR RTDDIPSSLP FFLKSGSVDR VHHLQPAEGF  300
EFSSSSIEDL DLELRLGDRP KPDLRIWXQE HVLTQPESLI GFRFRNLARS LIGEEGRTTR  360
KRKAKLRFGH LQHTTKLSQS LYRFEAXRAR SWKILIGDRE TTRVDXKMTW KP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	2e-12	54	81	2	29	superman protein
2l1o_A	2e-12	54	81	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ418476	0.0	HQ418476.1 Malus x domestica transcriptional regulator superman (SUP12) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017191639.2	0.0	uncharacterized LOC103450262 isoform X1
TrEMBL	A0A498I9P7	0.0	A0A498I9P7_MALDO; Uncharacterized protein
STRING	XP_008387805.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1776	30	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37740.1	4e-25	zinc-finger protein 10

Link Out ? help Back to Top
Phytozome	MDP0000317857