PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000318229
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 244aa    MW: 27834.7 Da    PI: 4.9989
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000318229genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.59.8e-135597754
                   HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                     Er+RR+++N++++ Lr ++P+ +      K++Ka++ + A++YI++L
  MDP0000318229 55 VSERNRRKKLNERLFALRAVVPNiS------KMDKASVIKDAIDYIQEL 97
                   57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.524897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.88E-1251102No hitNo description
SuperFamilySSF474591.57E-1652110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-1554103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-1654111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-105597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDNIGDEYKH YWETNMFLQT EELDSWDLDE AFSGYYDSSS PDGAASFMAS SKNVVSERNR  60
RKKLNERLFA LRAVVPNISK MDKASVIKDA IDYIQELHEQ ERRIQTEIVE LIESGKSNKK  120
SGSDFEQDLP VLLRSKKKKI EQLYDCGGSR ISTIEILELR VTYMGEKTLV VSLTCSKRTD  180
TMVKLCEVFE SLKLKIITAN ITAFSGRVLK TVFVEADEEE KDHLKIKIET AITALNDPQS  240
PMSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-145397953Transcription factor MYC2
5gnj_B6e-145397953Transcription factor MYC2
5gnj_E6e-145397953Transcription factor MYC2
5gnj_F6e-145397953Transcription factor MYC2
5gnj_G6e-145397953Transcription factor MYC2
5gnj_I6e-145397953Transcription factor MYC2
5gnj_M6e-145397953Transcription factor MYC2
5gnj_N6e-145397953Transcription factor MYC2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.140110.0leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008388700.11e-180transcription factor bHLH35
SwissprotQ2HIV94e-96BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A498HMJ91e-179A0A498HMJ9_MALDO; Uncharacterized protein
STRINGXP_008388700.11e-180(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-99bHLH family protein