PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000318866
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 259aa    MW: 28715.5 Da    PI: 4.7838
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000318866genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY29.31.7e-09130151223
                    --SS-EEEEEEE--TT-SS-EE CS
           WRKY   2 dDgynWrKYGqKevkgsefprs 23 
                    +Dg++WrKYGqK++ g+++pr 
  MDP0000318866 130 EDGHSWRKYGQKDILGAKHPRE 151
                    8*******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-8121151IPR003657WRKY domain
SuperFamilySSF1182906.67E-7128150IPR003657WRKY domain
SMARTSM007741.5E-4129171IPR003657WRKY domain
PROSITE profilePS508118.777130161IPR003657WRKY domain
PfamPF031068.4E-7130151IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDSGKSWEQK SLVNEIIEGM ELAKQLRLCL NAKSSADTKQ FLVQRILSSY EKALLMLKCG  60
GSPQSPIRAI ASAPESLMSA NEGPCCVDNN RSLQDHQDLT AVSKKRKEMA KWTEHVTRVI  120
SENGIEGPHE DGHSWRKYGQ KDILGAKHPR ENTASPFSFT SSPFGSISDD AFXSSMLDDQ  180
SLFDHFNQSL LSPAAGGSNY YFELPSQMRN IAGNEQRSES DIISANNSST NSPIPDMDFX  240
LEPVELDPYF PFDSPGFFL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.28611e-180root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028959531.11e-106LOW QUALITY PROTEIN: probable WRKY transcription factor 53
TrEMBLA0A498JJJ91e-104A0A498JJJ9_MALDO; Uncharacterized protein
STRINGXP_008358143.11e-169(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-28WRKY family protein