PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000319187
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bZIP
Protein Properties Length: 361aa    MW: 40021.3 Da    PI: 7.8318
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000319187genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_123.31.4e-071932321150
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1  11 qkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                      N++A r++R++ ka+++ Le++v +L aeN +L  +l+
  MDP0000319187 193 LGNKVAVRKYREKEKARVKLLEDEVVNLRAENXRLVMRLQ 232
                    56*********************************98886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.0E-11181251No hitNo description
SMARTSM003380.0011185250IPR004827Basic-leucine zipper domain
PfamPF077161.7E-9185240IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.0E-5195249No hitNo description
CDDcd146861.06E-7195242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071294Biological Processcellular response to zinc ion
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MCKKSRSKNF PRTLEPTSNQ ILEHGFERES RHLRVKTVRL TFERERLAES LSHRPIPIRG  60
MFIFLSVKXI ALEIWSGSRP SFEILVLXHS IGAYSSLVFA LFTLMDDQEV FPGANMGGEL  120
ASSCSMDSFF DDLLKDTHAC THAHTCNPPG PDYSHTHTCF HVHTKILSSA SEDKAGTDDT  180
AESGEKKSKK QPLGNKVAVR KYREKEKARV KLLEDEVVNL RAENXRLVMR LQGQPALEAE  240
IARLKCLLVD IRGRIEGEIG SFPYQKSVNP XLPNPNMPXA IFMNPCNVQC DDQLYCLRPG  300
MDGKCGDGAV MNGQDFNGCG FESLQCFANQ DGGAKELPDC GLGNGVSNVN SSGTSKRKSK  360
T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
128KKSRSKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.126931e-150bud| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008377738.20.0basic leucine zipper 23
RefseqXP_028958033.10.0basic leucine zipper 23
SwissprotQ8GTS21e-101BZP23_ARATH; Basic leucine zipper 23
TrEMBLA0A498JR590.0A0A498JR59_MALDO; Uncharacterized protein
STRINGXP_008377738.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25673277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16770.11e-95bZIP family protein
Publications ? help Back to Top
  1. Azevedo H, et al.
    Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
    Genom Data, 2016. 7: p. 256-8
    [PMID:26981422]
  2. Castro PH, et al.
    Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
    Sci Rep, 2017. 7(1): p. 3806
    [PMID:28630437]
  3. Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
    F-group bZIPs in barley-a role in Zn deficiency.
    Plant Cell Environ., 2017. 40(11): p. 2754-2770
    [PMID:28763829]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]