PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000319225

Common Name

C2H2L23, LOC103428118

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C2H2

Protein Properties

Length: 246aa MW: 26105.8 Da PI: 8.6054

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000319225	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00044	95	117	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k Fs+ L H +H MDP0000319225 95 YKCSVCNKGFSSYQALGGHKASH 117 9***********99999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.6E-4	90	119	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.56E-9	95	170	No hit	No description
PROSITE profile	PS50157	10.533	95	122	IPR007087	Zinc finger, C2H2
Pfam	PF13912	7.8E-13	95	119	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0099	95	117	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	97	117	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.5E-13	147	172	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.18	148	170	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.328	148	170	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	150	170	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MALEALKSAS TTTNTSPPFS SFEEADDRRQ ANHQIHSKEP WAKRKRSKRP RSEDPPTEEE 60 YLALCLIMLA RGTTAAVTTS SSESPAQPPS GELSYKCSVC NKGFSSYQAL GGHKASHRKS 120 DSSAAAAATV DHPIAAASAG PATSARTHEC SICHKTFPTG QALGGHKRCH YDGGSAVTTS 180 EGGGAGASSH SQSQSHQSQR GFDLNLPALP EFWPGFGADK KSQLSGEQEV QSPMVAKKPR 240 WLLGRD

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.13134	0.0	leaf\| root

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001315818.1	0.0	zinc finger protein ZAT10-like
TrEMBL	D9ZIT3	1e-180	D9ZIT3_MALDO; C2H2L domain class transcription factor
STRING	XP_008364438.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1327	32	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	1e-38	salt tolerance zinc finger

Link Out ? help Back to Top
Phytozome	MDP0000319225
Entrez Gene	103428118