PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000319772

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

MYB_related

Protein Properties

Length: 670aa MW: 74855 Da PI: 9.609

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000319772	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.3	7.2e-08	130	171	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eE ++l ++++q+ + + Ia +++ Rt +++k+r++k MDP0000319772 130 WTKEETDQLFELCQQFDLR-FIVIADRFPSSRTVEELKERYYK 171 *****************.********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF16282	7.0E-31	102	176	IPR032563	DAMP1, SANT/Myb-like domain
Gene3D	G3DSA:1.10.10.60	6.6E-7	124	173	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.3E-7	125	176	IPR009057	Homeodomain-like
SMART	SM00717	8.7E-8	126	175	IPR001005	SANT/Myb domain
CDD	cd11658	4.30E-18	130	172	No hit	No description
Pfam	PF05479	8.9E-64	544	670	IPR008796	Photosystem I reaction centre subunit N, chloroplastic
Gene3D	G3DSA:4.10.1190.10	2.3E-51	586	670	IPR008796	Photosystem I reaction centre subunit N, chloroplastic

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0015979	Biological Process	photosynthesis
GO:0000812	Cellular Component	Swr1 complex
GO:0009522	Cellular Component	photosystem I
GO:0035267	Cellular Component	NuA4 histone acetyltransferase complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence Send to blast
MDAKDILGLS KTSHPASQEK KSRPVKESQR KPDGISREVY ALIGGVPPLM PAVEPLQLKK 60 RPPTDEKITW QWLPFTSSAR KDNLQLYHWV RVVNGVPPIG DYSFAKYNKS VDVVKYTDEE 120 YEKHLTDDMW TKEETDQLFE LCQQFDLRFI VIADRFPSSR TVEELKERYY KVSRSILIAR 180 AAASPGDVSE HPIVKEPYKF TQERDRKRAL SMVLSQTKHQ ERKDSEVLAE AKRIAESRMA 240 ARNAKESELP ITFNVERAIV PGETLSPSSN SELPSAMVAP STSMAENTST LASLRMLRVY 300 LRTYALDQMI QAASSSAGLR TIKRVEQSLQ ELGVNLKPRV PTKSVCAQHL ELRKEIXTLL 360 NLQKQLQYKE AEGSSYRDSP YETPGTPKCV FLCGDQDRTF VPESTSFGGE RVGKRDQKRK 420 APGRAEAPSS PAQPKRPRKS SGILRCHYIE VSNVRAIEVG EDDVVSILHV KLKDCTHQSL 480 HSKDSKRVST VVLRYMGHSF ASQAMNSSVL ACNYAVSGTR MSELVNANTT CMPSVVLAAQ 540 TKVVALRAQQ PSTQNNQGAD GRRAVLLSLA AIAFTAFSSN STANAGVIDD YLEKSKANKE 600 LNDKKRLATS GANFARAFTV QFGSCKFPEN FTGCQDLAKQ KKVPFLSDDL SLECEGKDKY 660 KCGSNVFWKW

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence Send to blast

MDAKDILGLS KTSHPASQEK KSRPVKESQR KPDGISREVY ALIGGVPPLM PAVEPLQLKK  60
RPPTDEKITW QWLPFTSSAR KDNLQLYHWV RVVNGVPPIG DYSFAKYNKS VDVVKYTDEE  120
YEKHLTDDMW TKEETDQLFE LCQQFDLRFI VIADRFPSSR TVEELKERYY KVSRSILIAR  180
AAASPGDVSE HPIVKEPYKF TQERDRKRAL SMVLSQTKHQ ERKDSEVLAE AKRIAESRMA  240
ARNAKESELP ITFNVERAIV PGETLSPSSN SELPSAMVAP STSMAENTST LASLRMLRVY  300
LRTYALDQMI QAASSSAGLR TIKRVEQSLQ ELGVNLKPRV PTKSVCAQHL ELRKEIXTLL  360
NLQKQLQYKE AEGSSYRDSP YETPGTPKCV FLCGDQDRTF VPESTSFGGE RVGKRDQKRK  420
APGRAEAPSS PAQPKRPRKS SGILRCHYIE VSNVRAIEVG EDDVVSILHV KLKDCTHQSL  480
HSKDSKRVST VVLRYMGHSF ASQAMNSSVL ACNYAVSGTR MSELVNANTT CMPSVVLAAQ  540
TKVVALRAQQ PSTQNNQGAD GRRAVLLSLA AIAFTAFSSN STANAGVIDD YLEKSKANKE  600
LNDKKRLATS GANFARAFTV QFGSCKFPEN FTGCQDLAKQ KKVPFLSDDL SLECEGKDKY  660
KCGSNVFWKW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2wsc_N	1e-61	504	670	3	170	PHOTOSYSTEM I-N SUBUNIT
2wse_N	1e-61	504	670	3	170	PHOTOSYSTEM I-N SUBUNIT
2wsf_N	1e-61	504	670	3	170	PHOTOSYSTEM I-N SUBUNIT
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	433	439	PKRPRKS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.652	0.0	bud\| fruit\| leaf\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305\|Ref.5}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU226218	2e-76	CU226218.1 Populus EST from leave.
GenBank	EF148279	2e-76	EF148279.1 Populus trichocarpa x Populus deltoides clone WS01312_H19 unknown mRNA.
GenBank	EF148478	2e-76	EF148478.1 Populus trichocarpa x Populus deltoides clone WS01315_M03 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008368642.1	0.0	SWR1-complex protein 4-like isoform X2
Swissprot	Q8VZL6	0.0	SWC4_ARATH; SWR1-complex protein 4
TrEMBL	A0A498KNM9	0.0	A0A498KNM9_MALDO; Uncharacterized protein
STRING	XP_008368641.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4975	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47210.1	0.0	MYB_related family protein

Link Out ? help Back to Top
Phytozome	MDP0000319772

Publications ? help Back to Top
Gómez-Zambrano Á, et al. Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes. Mol Plant, 2018. 11(6): p. 815-832 [PMID:29604400]