PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000319851
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 772aa    MW: 87263.5 Da    PI: 8.5237
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000319851genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS241.14.7e-741755282373
           GRAS   2 velLlecAeavssgdlelaqalLarlsel......aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                    +e L+++A+++++++l+laq +L rl+++      + p g+p+qR+a yf+eAL++ l++     +++ + + ts+++ ++++ a+k fs +sP++
  MDP0000319851 175 IEELIRAADCFDTDELQLAQVILDRLNNRlrssspSKPVGKPLQRVAVYFKEALQSLLNG-----SDTAAREFTSWSDIVQTIRAYKGFSGISPVP 265
                    679************************98876333445679*******************.....56666666677789***************** PP

           GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlq..aLasRpeg...ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                     fsh+t+Nqa+l    g++r+H            p L +    asR++g   pp lRiT+v++ e   + e++ ++e+L++fA+el+++f+ +++ 
  MDP0000319851 266 MFSHFTTNQALL---GGSQRLHL----------HPQLAEkaDVASRNNGnpvPPVLRITAVVPDE--YAVETRLVRENLSQFAQELKIRFQVEFVP 346
                    **********97...6999**96..........45555411589***7766788*********55..9999***********************99 PP

           GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklp 276
                     +++e++++++ ++  gE++aV l+  + r l+++ +++     +L  ++++sP vvv+++ e   d +++sF + f++ le++s +++sl+a ++
  MDP0000319851 347 LRAFEMMSFKAVKFMDGEKTAVLLSPYILRRLSSQNNIS----GFLGNMRRVSPSVVVFIDGEgmGDAGTTSFRRNFVSGLEFFSIMLESLDAAVA 438
                    99************************9999995555555....5*******************6556699************************** PP

           GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                    + s+  +k+E  ll+++i+ +v  +g++          Wre ++ aG+++v+ls++a  qa++ll kv+++g++v +++++lvl+W+dr+Lv++Sa
  MDP0000319851 439 ASSDVVKKIETYLLRPKIQAAVEEAGRR-------IPPWREVFQGAGMRAVELSQFADFQAQCLLGKVQVRGFHVAKRQAELVLCWHDRALVATSA 527
                    ***********************99998.......99*********************************************************** PP

           GRAS 373 W 373
                    W
  MDP0000319851 528 W 528
                    * PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098525.673148509IPR005202Transcription factor GRAS
PfamPF035141.6E-71175528IPR005202Transcription factor GRAS
PfamPF031342.6E-9629672IPR004345TB2/DP1/HVA22-related protein
Sequence ? help Back to Top
Protein Sequence    Length: 772 aa     Download sequence    Send to blast
MRVPVSSPHS NNKNQSPKHN PQTNNPSVNF HLGISSLGGY EPTSVLDLRH SPSPVSAEKP  60
SKISAIPDVL SHSNHDPLEW EEEQVLHNLD WDSIMRDLGL HDENVPNLKT SIPQLNANDP  120
QISEYPHPQP FDATQLVHSD WDINLSEVYS SQNCYDHVTN DFHQSGNWNV GLDFIEELIR  180
AADCFDTDEL QLAQVILDRL NNRLRSSSPS KPVGKPLQRV AVYFKEALQS LLNGSDTAAR  240
EFTSWSDIVQ TIRAYKGFSG ISPVPMFSHF TTNQALLGGS QRLHLHPQLA EKADVASRNN  300
GNPVPPVLRI TAVVPDEYAV ETRLVRENLS QFAQELKIRF QVEFVPLRAF EMMSFKAVKF  360
MDGEKTAVLL SPYILRRLSS QNNISGFLGN MRRVSPSVVV FIDGEGMGDA GTTSFRRNFV  420
SGLEFFSIML ESLDAAVAAS SDVVKKIETY LLRPKIQAAV EEAGRRIPPW REVFQGAGMR  480
AVELSQFADF QAQCLLGKVQ VRGFHVAKRQ AELVLCWHDR ALVATSAWSK KNCSAHAIPC  540
SVGIGLPVYC TCQAIERKVR TAQEKWLLYW AGWNLSVLSV PFVLRIWMNC LKILNRMLSR  600
LMLLLNPIVQ LMDLSALLKY FQTSLFHDNL IIISVVLGCP MYYHMKFAFL VWLQLPTVDG  660
AKQLYTNHLR PFFLKHQAII DRVLVLTYSK VHKLLSAHKA EIEYARAMVM KMLGSDLPRH  720
NAIEGQIRPP NPDLPGQNAV EDQTRLDQYQ FRSLIMRISI ITKRRIVIAF RM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-2218053225382Protein SCARECROW
5b3h_A1e-2218053224381Protein SCARECROW
5b3h_D1e-2218053224381Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.132590.0bud| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393455.10.0scarecrow-like protein 15
RefseqXP_028949434.10.0scarecrow-like protein 15
RefseqXP_028949436.10.0scarecrow-like protein 15
RefseqXP_028949437.10.0scarecrow-like protein 15
SwissprotO232101e-145SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A498KJF00.0A0A498KJF0_MALDO; Uncharacterized protein
STRINGXP_008393455.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-137GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]