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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | MDP0000319851 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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| Family | GRAS | ||||||||
| Protein Properties | Length: 772aa MW: 87263.5 Da PI: 8.5237 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 241.1 | 4.7e-74 | 175 | 528 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel......aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
+e L+++A+++++++l+laq +L rl+++ + p g+p+qR+a yf+eAL++ l++ +++ + + ts+++ ++++ a+k fs +sP++
MDP0000319851 175 IEELIRAADCFDTDELQLAQVILDRLNNRlrssspSKPVGKPLQRVAVYFKEALQSLLNG-----SDTAAREFTSWSDIVQTIRAYKGFSGISPVP 265
679************************98876333445679*******************.....56666666677789***************** PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlq..aLasRpeg...ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
fsh+t+Nqa+l g++r+H p L + asR++g pp lRiT+v++ e + e++ ++e+L++fA+el+++f+ +++
MDP0000319851 266 MFSHFTTNQALL---GGSQRLHL----------HPQLAEkaDVASRNNGnpvPPVLRITAVVPDE--YAVETRLVRENLSQFAQELKIRFQVEFVP 346
**********97...6999**96..........45555411589***7766788*********55..9999***********************99 PP
GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklp 276
+++e++++++ ++ gE++aV l+ + r l+++ +++ +L ++++sP vvv+++ e d +++sF + f++ le++s +++sl+a ++
MDP0000319851 347 LRAFEMMSFKAVKFMDGEKTAVLLSPYILRRLSSQNNIS----GFLGNMRRVSPSVVVFIDGEgmGDAGTTSFRRNFVSGLEFFSIMLESLDAAVA 438
99************************9999995555555....5*******************6556699************************** PP
GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
+ s+ +k+E ll+++i+ +v +g++ Wre ++ aG+++v+ls++a qa++ll kv+++g++v +++++lvl+W+dr+Lv++Sa
MDP0000319851 439 ASSDVVKKIETYLLRPKIQAAVEEAGRR-------IPPWREVFQGAGMRAVELSQFADFQAQCLLGKVQVRGFHVAKRQAELVLCWHDRALVATSA 527
***********************99998.......99*********************************************************** PP
GRAS 373 W 373
W
MDP0000319851 528 W 528
* PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 25.673 | 148 | 509 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 1.6E-71 | 175 | 528 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03134 | 2.6E-9 | 629 | 672 | IPR004345 | TB2/DP1/HVA22-related protein |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 772 aa Download sequence Send to blast |
MRVPVSSPHS NNKNQSPKHN PQTNNPSVNF HLGISSLGGY EPTSVLDLRH SPSPVSAEKP 60 SKISAIPDVL SHSNHDPLEW EEEQVLHNLD WDSIMRDLGL HDENVPNLKT SIPQLNANDP 120 QISEYPHPQP FDATQLVHSD WDINLSEVYS SQNCYDHVTN DFHQSGNWNV GLDFIEELIR 180 AADCFDTDEL QLAQVILDRL NNRLRSSSPS KPVGKPLQRV AVYFKEALQS LLNGSDTAAR 240 EFTSWSDIVQ TIRAYKGFSG ISPVPMFSHF TTNQALLGGS QRLHLHPQLA EKADVASRNN 300 GNPVPPVLRI TAVVPDEYAV ETRLVRENLS QFAQELKIRF QVEFVPLRAF EMMSFKAVKF 360 MDGEKTAVLL SPYILRRLSS QNNISGFLGN MRRVSPSVVV FIDGEGMGDA GTTSFRRNFV 420 SGLEFFSIML ESLDAAVAAS SDVVKKIETY LLRPKIQAAV EEAGRRIPPW REVFQGAGMR 480 AVELSQFADF QAQCLLGKVQ VRGFHVAKRQ AELVLCWHDR ALVATSAWSK KNCSAHAIPC 540 SVGIGLPVYC TCQAIERKVR TAQEKWLLYW AGWNLSVLSV PFVLRIWMNC LKILNRMLSR 600 LMLLLNPIVQ LMDLSALLKY FQTSLFHDNL IIISVVLGCP MYYHMKFAFL VWLQLPTVDG 660 AKQLYTNHLR PFFLKHQAII DRVLVLTYSK VHKLLSAHKA EIEYARAMVM KMLGSDLPRH 720 NAIEGQIRPP NPDLPGQNAV EDQTRLDQYQ FRSLIMRISI ITKRRIVIAF RM |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3g_A | 1e-22 | 180 | 532 | 25 | 382 | Protein SCARECROW |
| 5b3h_A | 1e-22 | 180 | 532 | 24 | 381 | Protein SCARECROW |
| 5b3h_D | 1e-22 | 180 | 532 | 24 | 381 | Protein SCARECROW |
| Search in ModeBase | ||||||
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Mdo.13259 | 0.0 | bud| fruit | ||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_008393455.1 | 0.0 | scarecrow-like protein 15 | ||||
| Refseq | XP_028949434.1 | 0.0 | scarecrow-like protein 15 | ||||
| Refseq | XP_028949436.1 | 0.0 | scarecrow-like protein 15 | ||||
| Refseq | XP_028949437.1 | 0.0 | scarecrow-like protein 15 | ||||
| Swissprot | O23210 | 1e-145 | SCL15_ARATH; Scarecrow-like protein 15 | ||||
| TrEMBL | A0A498KJF0 | 0.0 | A0A498KJF0_MALDO; Uncharacterized protein | ||||
| STRING | XP_008393455.1 | 0.0 | (Malus domestica) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF5959 | 32 | 52 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G36710.1 | 1e-137 | GRAS family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | MDP0000319851 |
| Publications ? help Back to Top | |||
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