PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000320625
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 530aa    MW: 60128 Da    PI: 7.0495
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000320625genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.71.9e-29120205187
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                    rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  MDP0000320625 120 RWPRQETLTLLEIRSRLDFKFKEANQKGPLWDEVSRIMfEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 205
                    8*************************************99******************************98..55667*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.98119178IPR017877Myb-like domain
CDDcd122033.91E-20120185No hitNo description
PfamPF138371.9E-19120206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MEDQYNMSDL RQLMNGXRTH FPSIPLQPPT ELFPNHHRGP PPTLHHQHHP YEQLMMMGRS  60
QAHEMIPRGL HHHHEFRSPD STSAAGGVTT PTTVTAAPSL SGGGLETEAG GCLGGEGSGR  120
WPRQETLTLL EIRSRLDFKF KEANQKGPLW DEVSRIMFEE HGYQRSGKKC REKFENLYKY  180
YKKTKEGKAG RQDGKHYRFF RQLEALYGET TNAVVSPSLP AETHFVGNNS SNYRCQAAGN  240
AQANQEITTP YHHQSSDQKH CDSLSLSNSS EFETSSSEDQ DINNDVSAAA MDDDLQEVKT  300
TRKRRGGGGG RGWKAKIKEF IDVQMRKLME KQEEWLERLM RTLEQKERER VVREEEWRKQ  360
EVDRVEREHK FWAKERAWIE ARDKALMDTL HKISGGSSST DQAKATNYNS SSPDHHDRDQ  420
IVHNMSRSTK ELLNKKRKEN ANSRSASAAC YFQSNESCSS LYSSKGGYCG EMSNEQGNHD  480
GSNNSPNCGN NANNVGSNAV PDNCFPFLMS EGENLWENYG LKLSTESQNQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.231900.0bud| fruit| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008391755.20.0trihelix transcription factor PTL-like
TrEMBLA0A498I1W60.0A0A498I1W6_MALDO; Uncharacterized protein
STRINGXP_008391755.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10000.12e-77Trihelix family protein