PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000321492

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Trihelix

Protein Properties

Length: 665aa MW: 75532.2 Da PI: 8.6292

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000321492	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	26.8	1.3e-08	37	105	8	76
trihelix 8 laLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 l L++ + +e + ++ + ++W+ +++++ g++r+ q + kw+ l ++yk ik++e k ++ +s MDP0000321492 37 LILVNEVAAVEADCLKALSSFQKWKIIAQNCFXLGVSRTLDQYRRKWDALFGEYKGIKQWEAKCRASDS 105 5566666677777777778889****************************************9644433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF12056	5.6E-30	324	434	IPR021924	Protein of unknown function DUF3537
Pfam	PF12056	3.4E-83	433	649	IPR021924	Protein of unknown function DUF3537

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005773	Cellular Component	vacuole

Sequence ? help Back to Top
Protein Sequence Length: 665 aa Download sequence Send to blast
MKPEQTPSQL DRSHRSXGNR XSTRSQVAPD WNPTDELILV NEVAAVEADC LKALSSFQKW 60 KIIAQNCFXL GVSRTLDQYR RKWDALFGEY KGIKQWEAKC RASDSYWVLG IERRKRNGLP 120 ENFDQELFXG IDKLVRVRGN QSDTDPDSDP EDEAEAEXGR NLIPSQSKRR KRRSIPQKSC 180 PKENSFRSCK REKPRETHAQ EKPQETHAEE KPVGSGLKAI PTKSLAEERP QKSCVKKKLT 240 NSQRKEEAIS IEEQEKTAAM KLHESAELIR AIVTEKPDHE AAGVKSTGDL QTDFVRCQGD 300 RVIACLGDIV KTLDQLHHLV QEYELCSFKG SLKWWALDHS SCFGKFLSYF TFIFLTVLVP 360 ILTSLSLKLP SGDPISFNKL VQLPESSLAA IGFXTLSGFF RKYGLRQLLF LDGLTDDSGF 420 VRRGYTHELD KAFKTGVFLL VCVMFRLTCE LQILRFEGLY KLFERREYES SIIFQEHIRI 480 RKQLKVTSHR YRFFIIGCMF TITVSQFGAL LLVLASKTEK TFLNSGDLVV CSAVELSGLF 540 CCLMEAARIT HRAQGVVAIA TRWHMLLTCP NAXSDQQWKS RQISSEANGR CRESDCEHSS 600 DISTSVPPQQ PSSFQTRQAL XAYLSHNNGG ITLYGFALDR GXLHTLFAFE FSLVLWVLSK 660 VVVLS

Sequence ? help Back to Top

Protein Sequence Length: 665 aa Download sequence Send to blast

MKPEQTPSQL DRSHRSXGNR XSTRSQVAPD WNPTDELILV NEVAAVEADC LKALSSFQKW  60
KIIAQNCFXL GVSRTLDQYR RKWDALFGEY KGIKQWEAKC RASDSYWVLG IERRKRNGLP  120
ENFDQELFXG IDKLVRVRGN QSDTDPDSDP EDEAEAEXGR NLIPSQSKRR KRRSIPQKSC  180
PKENSFRSCK REKPRETHAQ EKPQETHAEE KPVGSGLKAI PTKSLAEERP QKSCVKKKLT  240
NSQRKEEAIS IEEQEKTAAM KLHESAELIR AIVTEKPDHE AAGVKSTGDL QTDFVRCQGD  300
RVIACLGDIV KTLDQLHHLV QEYELCSFKG SLKWWALDHS SCFGKFLSYF TFIFLTVLVP  360
ILTSLSLKLP SGDPISFNKL VQLPESSLAA IGFXTLSGFF RKYGLRQLLF LDGLTDDSGF  420
VRRGYTHELD KAFKTGVFLL VCVMFRLTCE LQILRFEGLY KLFERREYES SIIFQEHIRI  480
RKQLKVTSHR YRFFIIGCMF TITVSQFGAL LLVLASKTEK TFLNSGDLVV CSAVELSGLF  540
CCLMEAARIT HRAQGVVAIA TRWHMLLTCP NAXSDQQWKS RQISSEANGR CRESDCEHSS  600
DISTSVPPQQ PSSFQTRQAL XAYLSHNNGG ITLYGFALDR GXLHTLFAFE FSLVLWVLSK  660
VVVLS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.26606	0.0	leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017189045.1	0.0	uncharacterized protein LOC103441326
TrEMBL	A0A498JAN2	0.0	A0A498JAN2_MALDO; Uncharacterized protein
STRING	XP_008365157.1	0.0	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	8e-53	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	MDP0000321492