PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000321569
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family RAV
Protein Properties Length: 508aa    MW: 57321.1 Da    PI: 10.1845
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000321569genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.31.4e-113179155
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   s+ykGV    ++grW A+I+d      + r++lg+f  +eeAak +  a +k++g
  MDP0000321569 31 SRYKGVV-PQSNGRWGAQIYDK-----SHRVWLGTFNDEEEAAKTYNIALLKFRG 79
                   78****7.7779*********4.....6***********************9997 PP
2B391.46.7e-29165267198
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f+kv tpsdv++++r+v+pk++ae+h       g    +++ l++ede g++W++ ++y+ +s++yvl+kGW +Fvk+++Lk+gD+v+F+++  ++
  MDP0000321569 165 FEKVATPSDVGRLNRMVIPKQHAEKHfqvhlsvG--FGKGVLLKFEDELGKVWRFGYCYWSSSQSYVLSKGWIRFVKEKKLKAGDIVMFQRSVGED 258
                    89************************88887652..237899************************************************886688 PP

                    E..EEEEE- CS
             B3  90 felvvkvfr 98 
                    ++l++  + 
  MDP0000321569 259 KKLFIECRP 267
                    888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.58E-183184No hitNo description
SuperFamilySSF541717.85E-133186IPR016177DNA-binding domain
PfamPF008472.0E-43179IPR001471AP2/ERF domain
PROSITE profilePS5103217.8733287IPR001471AP2/ERF domain
SMARTSM003801.6E-163293IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-143285IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.3E-34158268IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-27162264IPR015300DNA-binding pseudobarrel domain
CDDcd100173.99E-26164267No hitNo description
PfamPF023621.8E-26165267IPR003340B3 DNA binding domain
PROSITE profilePS5086313.578165269IPR003340B3 DNA binding domain
SMARTSM010192.6E-20165268IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MDTMSCWNAS TSDYSTMNGA NGARSNKLPS SRYKGVVPQS NGRWGAQIYD KSHRVWLGTF  60
NDEEEAAKTY NIALLKFRGL DAITHLSRSQ MKPYGRDVTE ALFLESHSKA EIIDMLRKHS  120
YANELEMYKH KLHNGXALGL DDGGKRTKCY LXLMDTCSRE RELLFEKVAT PSDVGRLNRM  180
VIPKQHAEKH FQVHLSVGFG KGVLLKFEDE LGKVWRFGYC YWSSSQSYVL SKGWIRFVKE  240
KKLKAGDIVM FQRSVGEDKK LFIECRPRKV DVSRIEEMHG RVAGPLATVQ DDGVICGVVL  300
RLTHKRMVKP RLQTAPWVTC VVHSVTGKSP FSLVYTXVPK HVVGLIKLPT GPSGXVAAEK  360
MAKSIQAIKA KVCERLAQTY AKYKAVVDQH RGSHVFQVGD AVMVFFRKER FPVETYSKVK  420
PRKYGPYKIL QKINDNAYVV DXPSSMSISP TFNVANLFDH TASKATQKNR ERETAMASLA  480
QQFIGLRVKM LTALHLEALE ALNPAEAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-4216226811117DNA-binding protein RAV1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:18718758}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008342069.20.0AP2/ERF and B3 domain-containing transcription repressor TEM1-like
SwissprotQ9C6M53e-93RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A498H9V70.0A0A498H9V7_MALDO; Uncharacterized protein
STRINGXP_008342069.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.12e-95RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]