PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000322647
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family SBP
Protein Properties Length: 452aa    MW: 48742 Da    PI: 9.3881
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000322647genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP75.49.4e-2477125149
                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS
            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 
                    +CqvegCe+dls ak y++rhkvC  hsk+p+v+v+gleqrfCqqCsr 
  MDP0000322647  77 RCQVEGCEVDLSGAKPYYSRHKVCGLHSKTPTVIVAGLEQRFCQQCSRG 125
                    6**********************************************95 PP
2SBP45.22.6e-141972254876
                    SEEETTT--SS--S-STTTT-------S- CS
            SBP  48 rfhelsefDeekrsCrrrLakhnerrrkk 76 
                     fh l efD++krsCrrrLa+hnerrrk+
  MDP0000322647 197 MFHLLPEFDQGKRSCRRRLAGHNERRRKP 225
                    5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.9E-2571129IPR004333Transcription factor, SBP-box
PROSITE profilePS5114118.2375225IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.23E-2276124IPR004333Transcription factor, SBP-box
PfamPF031104.6E-1978131IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.85E-12197229IPR004333Transcription factor, SBP-box
PfamPF031101.8E-7198224IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MGSSSKTESA SSSSSSPPNS SAESLNGLKF GRKIYFEDGG FGALHKSSCG SAAGSSSAGA  60
TPPKKQRGGG NLGQRPRCQV EGCEVDLSGA KPYYSRHKVC GLHSKTPTVI VAGLEQRFCQ  120
QCSRGTPIAH YILQFQVFEE LQSLVLGGVL CVLAVIVSHL TSVCEPAVNK QNITCLLKEX  180
TNIPFTYAVI LLARYVMFHL LPEFDQGKRS CRRRLAGHNE RRRKPPPGSI LSTRGRLSSS  240
LYENSSRIGS FLMDFTAYPR FSGRDXWTTT TTRTSERAPV NQNANDAGKF LQQPWQSNXE  300
ISTSGFYLQG SAGGTSYPGP GIPPGECVTV VTDSSCALSL LSNQPWGSRN RVLGAGMNSL  360
MNTQGVPVAQ PVPHSATSNH FPTTSWGFKG NENGSSSHGM LPDLGLGQIS QPLSSQYSGV  420
LELSQQGRRQ QHMELGHTRG YDSTSQQMHW SL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A7e-1578141659squamosa promoter-binding protein-like 12
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.93120.0bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6738550.0KF673855.1 Malus domestica cultivar Fuji SBP-box transcription factor (SPL33) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028946278.11e-175squamosa promoter-binding-like protein 9
TrEMBLA0A498ICJ81e-177A0A498ICJ8_MALDO; Uncharacterized protein
STRINGXP_009369782.11e-174(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.12e-28squamosa promoter binding protein-like 9