PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000324166
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 27928.9 Da    PI: 9.9523
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000324166genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.92e-312574150
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                   krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  MDP0000324166 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 74
                   79***********************************************8 PP
2K-box112.54.1e-37931895100
          K-box   5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                    s++  ++ea ++++qqe+akL+++i +Lq+ +R+++G+ L+s+s+k+L++Le++Lek++++iRskKnell+++ie++qk+e +l+++n+ Lr+k++
  MDP0000324166  93 SNTGsVSEASTQYYQQEAAKLRAQIVKLQNDNRNMMGDALSSMSVKDLKSLENKLEKAISRIRSKKNELLFAEIEYMQKRELDLHNNNQLLRAKIA 188
                    344459****************************************************************************************98 PP

          K-box 100 e 100
                    e
  MDP0000324166 189 E 189
                    6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.6131777IPR002100Transcription factor, MADS-box
SMARTSM004327.1E-411776IPR002100Transcription factor, MADS-box
CDDcd002652.59E-451894No hitNo description
SuperFamilySSF554552.62E-331892IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-331939IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PfamPF003191.2E-262673IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-333954IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-335475IPR002100Transcription factor, MADS-box
PfamPF014865.6E-28100187IPR002487Transcription factor, K-box
PROSITE profilePS5129715.134103193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAYESKSLSM DSPQRKLGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSNRGRL YEYANNSVKG TIERYKKASA DSSNTGSVSE ASTQYYQQEA AKLRAQIVKL  120
QNDNRNMMGD ALSSMSVKDL KSLENKLEKA ISRIRSKKNE LLFAEIEYMQ KRELDLHNNN  180
QLLRAKIAEN ERGQQNINVM AGGGSYEILQ SQPYDSRDYF QVNVLQPNHH XNPRXDQISL  240
QLVX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-201789173Myocyte-specific enhancer factor 2B
1tqe_Q3e-201789173Myocyte-specific enhancer factor 2B
1tqe_R3e-201789173Myocyte-specific enhancer factor 2B
1tqe_S3e-201789173Myocyte-specific enhancer factor 2B
6bz1_A4e-201798183MEF2 CHIMERA
6bz1_B4e-201798183MEF2 CHIMERA
6bz1_C4e-201798183MEF2 CHIMERA
6bz1_D4e-201798183MEF2 CHIMERA
6c9l_A3e-201789173Myocyte-specific enhancer factor 2B
6c9l_B3e-201789173Myocyte-specific enhancer factor 2B
6c9l_C3e-201789173Myocyte-specific enhancer factor 2B
6c9l_D3e-201789173Myocyte-specific enhancer factor 2B
6c9l_E3e-201789173Myocyte-specific enhancer factor 2B
6c9l_F3e-201789173Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.6990.0bud| cell culture| fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flower. Preferentially expressed in stamen and carpel and weakly in petal. Undetected in leaves and roots.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1640070.0KP164007.1 Pyrus pyrifolia clone PpAG-3 AG MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008383546.21e-177floral homeotic protein AGAMOUS isoform X1
RefseqXP_008383547.21e-177floral homeotic protein AGAMOUS isoform X2
SwissprotQ408721e-128AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLA0A0D4ZYI71e-171A0A0D4ZYI7_PYRPY; AG MADS-box protein
STRINGXP_008383547.11e-176(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-127MIKC_MADS family protein