PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000324259

Common Name

LOC103443209, MADS14

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

MIKC_MADS

Protein Properties

Length: 243aa MW: 28113.5 Da PI: 10.0061

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000324259	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.6	2.6e-31	24	73	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+ MDP0000324259 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 73 79***********************************************8 PP
2	K-box	111.6	8.4e-37	92	188	4	100
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++g s++ea+++ +qqe++kL+++i+++q+++Rh+lGe+L++L++keL++Le +Lek++++iRskKne+l+++ie +qk+e elq++n+ Lr+k++ MDP0000324259 92 TDGGSVSEANTQFYQQEASKLRRQIREIQNSNRHILGESLSTLKVKELKNLEGRLEKGISRIRSKKNEILFSEIEFMQKRETELQHHNNFLRAKIA 187 566779****************************************************************************************98 PP K-box 100 e 100 e MDP0000324259 188 E 188 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.9E-40	16	75	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.501	16	76	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.04E-43	17	91	No hit	No description
SuperFamily	SSF55455	9.42E-33	17	88	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.1E-33	18	38	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	18	72	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-26	25	72	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.1E-33	38	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.1E-33	53	74	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	1.0E-26	100	186	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	14.666	102	192	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048481	Biological Process	plant ovule development
GO:0090376	Biological Process	seed trichome differentiation
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MEFANQAPES STQKKLGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL 60 IVFSTRGRLY EYANNSVRAT IDRYKKACAD STDGGSVSEA NTQFYQQEAS KLRRQIREIQ 120 NSNRHILGES LSTLKVKELK NLEGRLEKGI SRIRSKKNEI LFSEIEFMQK RETELQHHNN 180 FLRAKIAESE REQQQQQTHM MPGTSYDPSM PSNSYDRNFF PVILESNNNH YPRQGQTALQ 240 LVX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	6e-20	16	84	1	69	Myocyte-specific enhancer factor 2B
1tqe_Q	6e-20	16	84	1	69	Myocyte-specific enhancer factor 2B
1tqe_R	6e-20	16	84	1	69	Myocyte-specific enhancer factor 2B
1tqe_S	6e-20	16	84	1	69	Myocyte-specific enhancer factor 2B
5f28_A	6e-20	16	84	1	69	MEF2C
5f28_B	6e-20	16	84	1	69	MEF2C
5f28_C	6e-20	16	84	1	69	MEF2C
5f28_D	6e-20	16	84	1	69	MEF2C
6byy_A	7e-20	16	84	1	69	MEF2 CHIMERA
6byy_B	7e-20	16	84	1	69	MEF2 CHIMERA
6byy_C	7e-20	16	84	1	69	MEF2 CHIMERA
6byy_D	7e-20	16	84	1	69	MEF2 CHIMERA
6bz1_A	8e-20	16	84	1	69	MEF2 CHIMERA
6bz1_B	8e-20	16	84	1	69	MEF2 CHIMERA
6c9l_A	6e-20	16	84	1	69	Myocyte-specific enhancer factor 2B
6c9l_B	6e-20	16	84	1	69	Myocyte-specific enhancer factor 2B
6c9l_C	6e-20	16	84	1	69	Myocyte-specific enhancer factor 2B
6c9l_D	6e-20	16	84	1	69	Myocyte-specific enhancer factor 2B
6c9l_E	6e-20	16	84	1	69	Myocyte-specific enhancer factor 2B
6c9l_F	6e-20	16	84	1	69	Myocyte-specific enhancer factor 2B
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.2994	0.0	bud\| cell culture\| fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269\|PubMed:11414613}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00093	SELEX	Transfer from AT3G58780	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ251117	0.0	AJ251117.1 Malus domestica mRNA for C-type MADS box protein (mads14 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001280758.1	0.0	agamous-like MADS-box protein AGL1
Refseq	XP_008380232.1	0.0	agamous-like MADS-box protein AGL1 isoform X1
Refseq	XP_008380233.1	0.0	agamous-like MADS-box protein AGL1 isoform X1
Refseq	XP_008380234.1	0.0	agamous-like MADS-box protein AGL1 isoform X1
Refseq	XP_008380235.1	0.0	agamous-like MADS-box protein AGL1 isoform X1
Swissprot	Q93XH4	1e-122	MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBL	D9ZJ34	1e-179	D9ZJ34_MALDO; MADS domain class transcription factor
STRING	XP_008380232.1	1e-180	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF684	29	102

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58780.1	1e-119	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	MDP0000324259
Entrez Gene	103443209

Publications ? help Back to Top
Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development. Plant Mol. Biol., 2001. 45(5): p. 541-53 [PMID:11414613] van der Linden CG,Vosman B,Smulders MJ Cloning and characterization of four apple MADS box genes isolated from vegetative tissue. J. Exp. Bot., 2002. 53(371): p. 1025-36 [PMID:11971914] Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]