PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000335890
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 148aa    MW: 16618 Da    PI: 10.1037
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000335890genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54.2e-1060103344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                      +WT+ E +l+ +a + + ++   +W+ +a+ +g g++++++k ++
    MDP0000335890  60 SWTPKENKLFEKALAVYDKDtqdRWHNVAKAVG-GKSAEEVKRHY 103
                      7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.76456108IPR017884SANT domain
SMARTSM007176.9E-957109IPR001005SANT/Myb domain
SuperFamilySSF466894.34E-1359115IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-559104IPR009057Homeodomain-like
CDDcd001672.08E-960103No hitNo description
PfamPF002492.1E-860103IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
YLSPFCKPSF NXSSLTPYTL SSATXLISSR QPAYDSNFRF ISSRKIAMAS VSSSRNFNSS  60
WTPKENKLFE KALAVYDKDT QDRWHNVAKA VGGKSAEEVK RHYEILVHDL MHIESGHVPI  120
PNYKSAGGSG SNRGFGDEQR LMKNLKIX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-3351147192RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.251270.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009365547.13e-64PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1736e-37RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A251R9E32e-50A0A251R9E3_PRUPE; Uncharacterized protein
STRINGXP_009365547.11e-63(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.25e-38RAD-like 6