PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000363156

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C3H

Protein Properties

Length: 159aa MW: 18151.1 Da PI: 8.9551

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000363156	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.5	7.2e-11	98	122	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + + C ++++tGtCky ++C F+H+ MDP0000363156 98 GKADCLHYMQTGTCKYENNCLFNHP 122 6789********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	8.2E-5	96	123	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.591	96	124	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.2E-8	98	122	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.09E-6	100	123	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.4E-5	102	121	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
KNVSKDKAKR REELAVKQDQ TESKKVFKDK PRQRGELAEK QGQTKNKKVF KDNAKQRGEL 60 AEKQGQTRNK YCPGQCKGEP SVAPALELNF LGLPIRPGKA DCLHYMQTGT CKYENNCLFN 120 HPDPTPLEES RPQSTYESHG IHSETAEWND VITPYGWEX

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.6467	0.0	bud\| fruit\| leaf

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028959724.1	9e-95	trichohyalin-like isoform X12
Refseq	XP_028959725.1	1e-94	trichohyalin-like isoform X13
Refseq	XP_028959726.1	1e-94	caldesmon-like isoform X14
Refseq	XP_028959750.1	1e-95	vicilin-like seed storage protein At2g18540 isoform X37
TrEMBL	A0A498JJL4	4e-81	A0A498JJL4_MALDO; Uncharacterized protein
TrEMBL	A0A498JK69	3e-84	A0A498JK69_MALDO; Uncharacterized protein
STRING	XP_008384274.1	1e-109	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-15	C3H family protein

Link Out ? help Back to Top
Phytozome	MDP0000363156