PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000366022
Common NameLOC103404655, MdMADS8
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 253aa    MW: 29130.6 Da    PI: 8.8914
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000366022genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF991.8e-311565151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   krienk+nrqvtf kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  MDP0000366022 15 KRIENKINRQVTFXKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 65
                   79***********************************************96 PP
2K-box97.12.7e-32871807100
          K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                    ++  +++ es+++e+ kLk ++e+Lqr+qR+llGedL++L+ keL+qLe+qLe slk++Rs+K++++l+q+++lq+ke+ l e+n++L++kl+e
  MDP0000366022  87 VNRPAKELESSYREYMKLKGRYESLQRTQRNLLGEDLGPLNTKELEQLERQLEGSLKQVRSTKTQYMLDQLSDLQNKEQLLIEANRDLTMKLDE 180
                    456678899**********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.431767IPR002100Transcription factor, MADS-box
SMARTSM004322.5E-41766IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-33881IPR002100Transcription factor, MADS-box
CDDcd002651.62E-43885No hitNo description
PROSITE patternPS003500963IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-32929IPR002100Transcription factor, MADS-box
PfamPF003192.5E-261663IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-322944IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-324465IPR002100Transcription factor, MADS-box
PfamPF014862.6E-2693178IPR002487Transcription factor, K-box
PROSITE profilePS5129715.4394184IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0048481Biological Processplant ovule development
GO:0071486Biological Processcellular response to high light intensity
GO:0071492Biological Processcellular response to UV-A
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
FLVTKDMGRG RVELKRIENK INRQVTFXKR RNGLLKKAYE LSVLCDAEVA LIIFSNRGKL  60
YEFCSSSSIL KTLDRYQKCS YGAVDQVNRP AKELESSYRE YMKLKGRYES LQRTQRNLLG  120
EDLGPLNTKE LEQLERQLEG SLKQVRSTKT QYMLDQLSDL QNKEQLLIEA NRDLTMKLDE  180
ISSRNQLRQS WEGGDQGMAY ATQHHHAQSQ GFFQPLDCNP TLQMGYSAVG SEQMSATTNA  240
QQVNCFIPGW MLX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A4e-33811781101Developmental protein SEPALLATA 3
4ox0_B4e-33811781101Developmental protein SEPALLATA 3
4ox0_C4e-33811781101Developmental protein SEPALLATA 3
4ox0_D4e-33811781101Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.29520.0bud| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4152380.0KC415238.1 Malus domestica cultivar Fuji Beni Shogun MADS8-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280893.10.0developmental protein SEPALLATA 1
RefseqNP_001315744.10.0developmental protein SEPALLATA 1-like
SwissprotQ8LLR21e-145MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLQ9SBA60.0Q9SBA6_MALDO; MADS8-1
STRINGXP_008341807.11e-180(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.11e-129MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  4. Sung SK,An G
    Molecular cloning and characterization of a MADS-box cDNA clone of the Fuji apple.
    Plant Cell Physiol., 1997. 38(4): p. 484-9
    [PMID:9177035]